Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3097 and HP15_3098 are separated by 193 nucleotides HP15_3098 and HP15_3099 are separated by 5 nucleotides HP15_3099 and HP15_3100 are separated by 20 nucleotides HP15_3100 and HP15_3101 are separated by 3 nucleotides
HP15_3097: HP15_3097 - hypothetical protein, at 3,252,535 to 3,253,833
_3097
HP15_3098: HP15_3098 - membrane protein, at 3,254,027 to 3,254,269
_3098
HP15_3099: HP15_3099 - hypothetical protein, at 3,254,275 to 3,254,484
_3099
HP15_3100: HP15_3100 - hypothetical protein, at 3,254,505 to 3,254,801
_3100
HP15_3101: HP15_3101 - hypothetical protein, at 3,254,805 to 3,254,921
_3101
Position (kb)
3254
3255 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3253.046 kb on + strand, within HP15_3097 at 3253.069 kb on - strand, within HP15_3097 at 3253.122 kb on - strand, within HP15_3097 at 3253.240 kb on + strand, within HP15_3097 at 3253.285 kb on + strand, within HP15_3097 at 3253.293 kb on - strand, within HP15_3097 at 3253.362 kb on - strand, within HP15_3097 at 3253.395 kb on - strand, within HP15_3097 at 3253.401 kb on - strand, within HP15_3097 at 3253.441 kb on + strand, within HP15_3097 at 3253.493 kb on - strand, within HP15_3097 at 3253.550 kb on + strand, within HP15_3097 at 3253.558 kb on - strand, within HP15_3097 at 3253.566 kb on - strand, within HP15_3097 at 3253.647 kb on + strand, within HP15_3097 at 3253.767 kb on + strand at 3253.774 kb on + strand at 3253.774 kb on + strand at 3253.775 kb on - strand at 3253.782 kb on - strand at 3253.803 kb on - strand at 3253.823 kb on + strand at 3253.823 kb on + strand at 3253.917 kb on - strand at 3253.946 kb on - strand at 3253.946 kb on - strand at 3254.006 kb on - strand at 3254.011 kb on + strand at 3254.016 kb on + strand at 3254.098 kb on - strand, within HP15_3098 at 3254.149 kb on - strand, within HP15_3098 at 3254.207 kb on + strand, within HP15_3098 at 3254.210 kb on - strand, within HP15_3098 at 3254.225 kb on - strand, within HP15_3098 at 3254.323 kb on - strand, within HP15_3099 at 3254.325 kb on + strand, within HP15_3099 at 3254.345 kb on - strand, within HP15_3099 at 3254.345 kb on - strand, within HP15_3099 at 3254.411 kb on - strand, within HP15_3099 at 3254.418 kb on + strand, within HP15_3099 at 3254.423 kb on + strand, within HP15_3099 at 3254.428 kb on + strand, within HP15_3099 at 3254.431 kb on - strand, within HP15_3099 at 3254.436 kb on - strand, within HP15_3099 at 3254.469 kb on + strand at 3254.469 kb on - strand at 3254.730 kb on - strand, within HP15_3100 at 3255.087 kb on - strand at 3255.089 kb on + strand at 3255.110 kb on - strand at 3255.181 kb on + strand at 3255.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 3,253,046 + HP15_3097 0.39 +1.6 3,253,069 - HP15_3097 0.41 +1.4 3,253,122 - HP15_3097 0.45 +0.3 3,253,240 + HP15_3097 0.54 +0.2 3,253,285 + HP15_3097 0.58 +1.4 3,253,293 - HP15_3097 0.58 -0.8 3,253,362 - HP15_3097 0.64 -0.1 3,253,395 - HP15_3097 0.66 -1.2 3,253,401 - HP15_3097 0.67 -0.1 3,253,441 + HP15_3097 0.70 -0.4 3,253,493 - HP15_3097 0.74 -0.4 3,253,550 + HP15_3097 0.78 +0.5 3,253,558 - HP15_3097 0.79 -0.9 3,253,566 - HP15_3097 0.79 +1.6 3,253,647 + HP15_3097 0.86 +0.7 3,253,767 + +1.1 3,253,774 + +1.1 3,253,774 + +1.3 3,253,775 - -0.3 3,253,782 - +0.0 3,253,803 - -0.2 3,253,823 + +0.3 3,253,823 + -1.2 3,253,917 - +0.4 3,253,946 - +1.4 3,253,946 - +0.0 3,254,006 - +3.9 3,254,011 + +0.9 3,254,016 + -0.7 3,254,098 - HP15_3098 0.29 +1.3 3,254,149 - HP15_3098 0.50 -1.0 3,254,207 + HP15_3098 0.74 +2.0 3,254,210 - HP15_3098 0.75 -0.3 3,254,225 - HP15_3098 0.81 +1.1 3,254,323 - HP15_3099 0.23 -0.0 3,254,325 + HP15_3099 0.24 -1.0 3,254,345 - HP15_3099 0.33 -0.3 3,254,345 - HP15_3099 0.33 +0.2 3,254,411 - HP15_3099 0.65 +0.4 3,254,418 + HP15_3099 0.68 -0.2 3,254,423 + HP15_3099 0.70 -0.8 3,254,428 + HP15_3099 0.73 +0.5 3,254,431 - HP15_3099 0.74 +0.2 3,254,436 - HP15_3099 0.77 +0.4 3,254,469 + -0.6 3,254,469 - +0.1 3,254,730 - HP15_3100 0.76 +0.9 3,255,087 - -0.3 3,255,089 + -0.1 3,255,110 - +3.9 3,255,181 + -0.5 3,255,258 - +0.2
Or see this region's nucleotide sequence