Strain Fitness in Marinobacter adhaerens HP15 around HP15_3098

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3097 and HP15_3098 are separated by 193 nucleotidesHP15_3098 and HP15_3099 are separated by 5 nucleotidesHP15_3099 and HP15_3100 are separated by 20 nucleotidesHP15_3100 and HP15_3101 are separated by 3 nucleotides HP15_3097: HP15_3097 - hypothetical protein, at 3,252,535 to 3,253,833 _3097 HP15_3098: HP15_3098 - membrane protein, at 3,254,027 to 3,254,269 _3098 HP15_3099: HP15_3099 - hypothetical protein, at 3,254,275 to 3,254,484 _3099 HP15_3100: HP15_3100 - hypothetical protein, at 3,254,505 to 3,254,801 _3100 HP15_3101: HP15_3101 - hypothetical protein, at 3,254,805 to 3,254,921 _3101 Position (kb) 3254 3255Strain fitness (log2 ratio) -1 0 1 2 3 4at 3253.046 kb on + strand, within HP15_3097at 3253.069 kb on - strand, within HP15_3097at 3253.122 kb on - strand, within HP15_3097at 3253.240 kb on + strand, within HP15_3097at 3253.285 kb on + strand, within HP15_3097at 3253.293 kb on - strand, within HP15_3097at 3253.362 kb on - strand, within HP15_3097at 3253.395 kb on - strand, within HP15_3097at 3253.401 kb on - strand, within HP15_3097at 3253.441 kb on + strand, within HP15_3097at 3253.493 kb on - strand, within HP15_3097at 3253.550 kb on + strand, within HP15_3097at 3253.558 kb on - strand, within HP15_3097at 3253.566 kb on - strand, within HP15_3097at 3253.647 kb on + strand, within HP15_3097at 3253.767 kb on + strandat 3253.774 kb on + strandat 3253.774 kb on + strandat 3253.775 kb on - strandat 3253.782 kb on - strandat 3253.803 kb on - strandat 3253.823 kb on + strandat 3253.823 kb on + strandat 3253.917 kb on - strandat 3253.946 kb on - strandat 3253.946 kb on - strandat 3254.006 kb on - strandat 3254.011 kb on + strandat 3254.016 kb on + strandat 3254.098 kb on - strand, within HP15_3098at 3254.149 kb on - strand, within HP15_3098at 3254.207 kb on + strand, within HP15_3098at 3254.210 kb on - strand, within HP15_3098at 3254.225 kb on - strand, within HP15_3098at 3254.323 kb on - strand, within HP15_3099at 3254.325 kb on + strand, within HP15_3099at 3254.345 kb on - strand, within HP15_3099at 3254.345 kb on - strand, within HP15_3099at 3254.411 kb on - strand, within HP15_3099at 3254.418 kb on + strand, within HP15_3099at 3254.423 kb on + strand, within HP15_3099at 3254.428 kb on + strand, within HP15_3099at 3254.431 kb on - strand, within HP15_3099at 3254.436 kb on - strand, within HP15_3099at 3254.469 kb on + strandat 3254.469 kb on - strandat 3254.730 kb on - strand, within HP15_3100at 3255.087 kb on - strandat 3255.089 kb on + strandat 3255.110 kb on - strandat 3255.181 kb on + strandat 3255.258 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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3,253,046 + HP15_3097 0.39 +1.6
3,253,069 - HP15_3097 0.41 +1.4
3,253,122 - HP15_3097 0.45 +0.3
3,253,240 + HP15_3097 0.54 +0.2
3,253,285 + HP15_3097 0.58 +1.4
3,253,293 - HP15_3097 0.58 -0.8
3,253,362 - HP15_3097 0.64 -0.1
3,253,395 - HP15_3097 0.66 -1.2
3,253,401 - HP15_3097 0.67 -0.1
3,253,441 + HP15_3097 0.70 -0.4
3,253,493 - HP15_3097 0.74 -0.4
3,253,550 + HP15_3097 0.78 +0.5
3,253,558 - HP15_3097 0.79 -0.9
3,253,566 - HP15_3097 0.79 +1.6
3,253,647 + HP15_3097 0.86 +0.7
3,253,767 + +1.1
3,253,774 + +1.1
3,253,774 + +1.3
3,253,775 - -0.3
3,253,782 - +0.0
3,253,803 - -0.2
3,253,823 + +0.3
3,253,823 + -1.2
3,253,917 - +0.4
3,253,946 - +1.4
3,253,946 - +0.0
3,254,006 - +3.9
3,254,011 + +0.9
3,254,016 + -0.7
3,254,098 - HP15_3098 0.29 +1.3
3,254,149 - HP15_3098 0.50 -1.0
3,254,207 + HP15_3098 0.74 +2.0
3,254,210 - HP15_3098 0.75 -0.3
3,254,225 - HP15_3098 0.81 +1.1
3,254,323 - HP15_3099 0.23 -0.0
3,254,325 + HP15_3099 0.24 -1.0
3,254,345 - HP15_3099 0.33 -0.3
3,254,345 - HP15_3099 0.33 +0.2
3,254,411 - HP15_3099 0.65 +0.4
3,254,418 + HP15_3099 0.68 -0.2
3,254,423 + HP15_3099 0.70 -0.8
3,254,428 + HP15_3099 0.73 +0.5
3,254,431 - HP15_3099 0.74 +0.2
3,254,436 - HP15_3099 0.77 +0.4
3,254,469 + -0.6
3,254,469 - +0.1
3,254,730 - HP15_3100 0.76 +0.9
3,255,087 - -0.3
3,255,089 + -0.1
3,255,110 - +3.9
3,255,181 + -0.5
3,255,258 - +0.2

Or see this region's nucleotide sequence