Strain Fitness in Marinobacter adhaerens HP15 around HP15_2929

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2928 and HP15_2929 overlap by 18 nucleotidesHP15_2929 and HP15_2930 are separated by 200 nucleotides HP15_2928: HP15_2928 - signal transduction protein, at 3,067,271 to 3,068,320 _2928 HP15_2929: HP15_2929 - ribonuclease BN, at 3,068,303 to 3,069,664 _2929 HP15_2930: HP15_2930 - long-chain fatty acid transport protein, at 3,069,865 to 3,071,118 _2930 Position (kb) 3068 3069 3070Strain fitness (log2 ratio) -2 -1 0 1 2at 3067.356 kb on - strandat 3067.395 kb on + strand, within HP15_2928at 3067.468 kb on - strand, within HP15_2928at 3067.503 kb on + strand, within HP15_2928at 3067.583 kb on + strand, within HP15_2928at 3067.675 kb on - strand, within HP15_2928at 3067.737 kb on + strand, within HP15_2928at 3067.814 kb on - strand, within HP15_2928at 3067.841 kb on + strand, within HP15_2928at 3067.841 kb on + strand, within HP15_2928at 3067.841 kb on + strand, within HP15_2928at 3067.841 kb on + strand, within HP15_2928at 3067.849 kb on - strand, within HP15_2928at 3067.906 kb on + strand, within HP15_2928at 3068.051 kb on - strand, within HP15_2928at 3068.177 kb on - strand, within HP15_2928at 3068.185 kb on - strand, within HP15_2928at 3068.187 kb on + strand, within HP15_2928at 3068.218 kb on - strandat 3068.281 kb on - strandat 3068.467 kb on + strand, within HP15_2929at 3068.485 kb on - strand, within HP15_2929at 3068.564 kb on + strand, within HP15_2929at 3068.604 kb on - strand, within HP15_2929at 3068.658 kb on + strand, within HP15_2929at 3068.661 kb on - strand, within HP15_2929at 3068.824 kb on - strand, within HP15_2929at 3068.917 kb on - strand, within HP15_2929at 3068.952 kb on - strand, within HP15_2929at 3068.957 kb on - strand, within HP15_2929at 3069.269 kb on - strand, within HP15_2929at 3069.273 kb on + strand, within HP15_2929at 3069.281 kb on - strand, within HP15_2929at 3069.348 kb on - strand, within HP15_2929at 3069.355 kb on + strand, within HP15_2929at 3069.363 kb on - strand, within HP15_2929at 3069.451 kb on + strand, within HP15_2929at 3069.510 kb on + strand, within HP15_2929at 3069.571 kb on + strandat 3069.576 kb on + strandat 3069.579 kb on - strandat 3069.582 kb on + strandat 3069.615 kb on + strandat 3069.690 kb on + strandat 3069.713 kb on - strandat 3069.715 kb on + strandat 3069.719 kb on + strandat 3069.724 kb on + strandat 3069.732 kb on - strandat 3069.880 kb on + strandat 3069.952 kb on + strandat 3069.983 kb on + strandat 3069.997 kb on - strand, within HP15_2930at 3070.007 kb on - strand, within HP15_2930at 3070.091 kb on + strand, within HP15_2930at 3070.095 kb on + strand, within HP15_2930at 3070.100 kb on + strand, within HP15_2930at 3070.104 kb on - strand, within HP15_2930at 3070.119 kb on - strand, within HP15_2930at 3070.134 kb on + strand, within HP15_2930at 3070.147 kb on - strand, within HP15_2930at 3070.293 kb on + strand, within HP15_2930at 3070.301 kb on - strand, within HP15_2930at 3070.347 kb on - strand, within HP15_2930at 3070.426 kb on + strand, within HP15_2930at 3070.426 kb on + strand, within HP15_2930at 3070.431 kb on - strand, within HP15_2930at 3070.456 kb on - strand, within HP15_2930at 3070.494 kb on + strand, within HP15_2930at 3070.549 kb on + strand, within HP15_2930at 3070.549 kb on + strand, within HP15_2930at 3070.612 kb on + strand, within HP15_2930at 3070.631 kb on + strand, within HP15_2930at 3070.651 kb on + strand, within HP15_2930

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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3,067,356 - -0.4
3,067,395 + HP15_2928 0.12 -0.1
3,067,468 - HP15_2928 0.19 +1.0
3,067,503 + HP15_2928 0.22 +1.3
3,067,583 + HP15_2928 0.30 +0.2
3,067,675 - HP15_2928 0.38 +0.4
3,067,737 + HP15_2928 0.44 -0.0
3,067,814 - HP15_2928 0.52 +2.7
3,067,841 + HP15_2928 0.54 +0.8
3,067,841 + HP15_2928 0.54 +1.0
3,067,841 + HP15_2928 0.54 -0.9
3,067,841 + HP15_2928 0.54 -0.5
3,067,849 - HP15_2928 0.55 -2.3
3,067,906 + HP15_2928 0.60 +0.2
3,068,051 - HP15_2928 0.74 -0.5
3,068,177 - HP15_2928 0.86 +1.4
3,068,185 - HP15_2928 0.87 +0.1
3,068,187 + HP15_2928 0.87 +0.2
3,068,218 - +0.8
3,068,281 - +0.9
3,068,467 + HP15_2929 0.12 +0.2
3,068,485 - HP15_2929 0.13 +1.0
3,068,564 + HP15_2929 0.19 +1.0
3,068,604 - HP15_2929 0.22 +0.1
3,068,658 + HP15_2929 0.26 +0.0
3,068,661 - HP15_2929 0.26 -1.1
3,068,824 - HP15_2929 0.38 -0.8
3,068,917 - HP15_2929 0.45 +0.9
3,068,952 - HP15_2929 0.48 +1.1
3,068,957 - HP15_2929 0.48 -1.7
3,069,269 - HP15_2929 0.71 +0.6
3,069,273 + HP15_2929 0.71 +0.2
3,069,281 - HP15_2929 0.72 +0.3
3,069,348 - HP15_2929 0.77 -0.1
3,069,355 + HP15_2929 0.77 -0.2
3,069,363 - HP15_2929 0.78 +0.1
3,069,451 + HP15_2929 0.84 +1.2
3,069,510 + HP15_2929 0.89 -0.4
3,069,571 + +0.4
3,069,576 + -1.1
3,069,579 - -1.1
3,069,582 + +0.4
3,069,615 + -0.9
3,069,690 + -0.1
3,069,713 - -0.6
3,069,715 + -1.4
3,069,719 + +1.3
3,069,724 + -0.2
3,069,732 - -0.7
3,069,880 + +1.1
3,069,952 + +0.1
3,069,983 + +1.8
3,069,997 - HP15_2930 0.11 +1.1
3,070,007 - HP15_2930 0.11 +1.8
3,070,091 + HP15_2930 0.18 +1.2
3,070,095 + HP15_2930 0.18 +0.9
3,070,100 + HP15_2930 0.19 +0.3
3,070,104 - HP15_2930 0.19 -0.5
3,070,119 - HP15_2930 0.20 +0.1
3,070,134 + HP15_2930 0.21 +0.9
3,070,147 - HP15_2930 0.22 +0.4
3,070,293 + HP15_2930 0.34 -1.1
3,070,301 - HP15_2930 0.35 -0.6
3,070,347 - HP15_2930 0.38 -1.2
3,070,426 + HP15_2930 0.45 -0.1
3,070,426 + HP15_2930 0.45 +0.3
3,070,431 - HP15_2930 0.45 -1.3
3,070,456 - HP15_2930 0.47 -0.1
3,070,494 + HP15_2930 0.50 -0.8
3,070,549 + HP15_2930 0.55 +0.1
3,070,549 + HP15_2930 0.55 -1.4
3,070,612 + HP15_2930 0.60 +1.1
3,070,631 + HP15_2930 0.61 +0.1
3,070,651 + HP15_2930 0.63 +1.1

Or see this region's nucleotide sequence