Strain Fitness in Marinobacter adhaerens HP15 around HP15_2832

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2830 and HP15_2831 are separated by 177 nucleotidesHP15_2831 and HP15_2832 are separated by 95 nucleotidesHP15_2832 and HP15_2833 are separated by 390 nucleotidesHP15_2833 and HP15_2834 are separated by 27 nucleotides HP15_2830: HP15_2830 - transcriptional regulator, XRE family, at 2,973,526 to 2,974,308 _2830 HP15_2831: HP15_2831 - conserved hypothetical protein, membrane, at 2,974,486 to 2,974,866 _2831 HP15_2832: HP15_2832 - DNA damage response helicase (yejH or radD) (from data), at 2,974,962 to 2,976,719 _2832 HP15_2833: HP15_2833 - conserved hypothetical protein, at 2,977,110 to 2,977,334 _2833 HP15_2834: HP15_2834 - OmpA/MotB domain protein, at 2,977,362 to 2,978,171 _2834 Position (kb) 2974 2975 2976 2977Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2974.027 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.082 kb on + strand, within HP15_2830at 2974.090 kb on - strand, within HP15_2830at 2974.090 kb on - strand, within HP15_2830at 2974.090 kb on - strand, within HP15_2830at 2974.117 kb on - strand, within HP15_2830at 2974.132 kb on - strand, within HP15_2830at 2974.213 kb on - strand, within HP15_2830at 2974.287 kb on + strandat 2974.403 kb on + strandat 2974.426 kb on - strandat 2974.443 kb on + strandat 2974.564 kb on + strand, within HP15_2831at 2974.598 kb on + strand, within HP15_2831at 2974.623 kb on + strand, within HP15_2831at 2974.629 kb on - strand, within HP15_2831at 2974.663 kb on - strand, within HP15_2831at 2974.723 kb on + strand, within HP15_2831at 2974.745 kb on - strand, within HP15_2831at 2974.762 kb on + strand, within HP15_2831at 2974.762 kb on + strand, within HP15_2831at 2974.770 kb on - strand, within HP15_2831at 2974.770 kb on - strand, within HP15_2831at 2974.770 kb on - strand, within HP15_2831at 2974.814 kb on - strand, within HP15_2831at 2974.849 kb on - strandat 2975.018 kb on + strandat 2975.121 kb on - strandat 2975.277 kb on + strand, within HP15_2832at 2975.359 kb on - strand, within HP15_2832at 2975.362 kb on - strand, within HP15_2832at 2975.432 kb on + strand, within HP15_2832at 2975.472 kb on - strand, within HP15_2832at 2975.612 kb on + strand, within HP15_2832at 2975.674 kb on + strand, within HP15_2832at 2975.776 kb on + strand, within HP15_2832at 2975.781 kb on + strand, within HP15_2832at 2975.786 kb on + strand, within HP15_2832at 2975.791 kb on + strand, within HP15_2832at 2975.822 kb on + strand, within HP15_2832at 2975.852 kb on - strand, within HP15_2832at 2975.858 kb on + strand, within HP15_2832at 2975.866 kb on - strand, within HP15_2832at 2975.944 kb on - strand, within HP15_2832at 2975.981 kb on - strand, within HP15_2832at 2976.064 kb on + strand, within HP15_2832at 2976.231 kb on + strand, within HP15_2832at 2976.323 kb on + strand, within HP15_2832at 2976.405 kb on - strand, within HP15_2832at 2976.514 kb on + strand, within HP15_2832at 2976.745 kb on - strandat 2977.024 kb on + strandat 2977.029 kb on - strandat 2977.032 kb on - strandat 2977.130 kb on + strandat 2977.238 kb on - strand, within HP15_2833at 2977.270 kb on - strand, within HP15_2833at 2977.271 kb on + strand, within HP15_2833at 2977.329 kb on + strandat 2977.392 kb on + strandat 2977.459 kb on + strand, within HP15_2834at 2977.459 kb on + strand, within HP15_2834at 2977.644 kb on - strand, within HP15_2834at 2977.644 kb on - strand, within HP15_2834at 2977.681 kb on - strand, within HP15_2834at 2977.701 kb on + strand, within HP15_2834

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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2,974,027 + HP15_2830 0.64 +1.5
2,974,082 + HP15_2830 0.71 +0.6
2,974,082 + HP15_2830 0.71 -0.3
2,974,082 + HP15_2830 0.71 -1.1
2,974,082 + HP15_2830 0.71 -1.1
2,974,090 - HP15_2830 0.72 -1.0
2,974,090 - HP15_2830 0.72 +1.0
2,974,090 - HP15_2830 0.72 -0.4
2,974,117 - HP15_2830 0.75 +1.3
2,974,132 - HP15_2830 0.77 +1.2
2,974,213 - HP15_2830 0.88 -0.6
2,974,287 + -1.1
2,974,403 + +0.5
2,974,426 - +0.9
2,974,443 + +0.7
2,974,564 + HP15_2831 0.20 +0.0
2,974,598 + HP15_2831 0.29 +0.5
2,974,623 + HP15_2831 0.36 -0.1
2,974,629 - HP15_2831 0.38 -0.3
2,974,663 - HP15_2831 0.46 -1.8
2,974,723 + HP15_2831 0.62 -0.8
2,974,745 - HP15_2831 0.68 +0.2
2,974,762 + HP15_2831 0.72 -0.5
2,974,762 + HP15_2831 0.72 -0.4
2,974,770 - HP15_2831 0.75 +1.1
2,974,770 - HP15_2831 0.75 -0.9
2,974,770 - HP15_2831 0.75 -1.2
2,974,814 - HP15_2831 0.86 +0.5
2,974,849 - -0.2
2,975,018 + -1.6
2,975,121 - +0.4
2,975,277 + HP15_2832 0.18 +1.9
2,975,359 - HP15_2832 0.23 -0.3
2,975,362 - HP15_2832 0.23 +0.2
2,975,432 + HP15_2832 0.27 +2.4
2,975,472 - HP15_2832 0.29 +0.8
2,975,612 + HP15_2832 0.37 +1.6
2,975,674 + HP15_2832 0.41 +0.8
2,975,776 + HP15_2832 0.46 -0.8
2,975,781 + HP15_2832 0.47 -3.3
2,975,786 + HP15_2832 0.47 -1.6
2,975,791 + HP15_2832 0.47 -0.7
2,975,822 + HP15_2832 0.49 +0.2
2,975,852 - HP15_2832 0.51 +0.6
2,975,858 + HP15_2832 0.51 +1.4
2,975,866 - HP15_2832 0.51 -2.5
2,975,944 - HP15_2832 0.56 +2.2
2,975,981 - HP15_2832 0.58 -0.5
2,976,064 + HP15_2832 0.63 -0.1
2,976,231 + HP15_2832 0.72 +0.2
2,976,323 + HP15_2832 0.77 +0.9
2,976,405 - HP15_2832 0.82 +1.8
2,976,514 + HP15_2832 0.88 +0.8
2,976,745 - -0.3
2,977,024 + +1.2
2,977,029 - +1.2
2,977,032 - +0.5
2,977,130 + +0.1
2,977,238 - HP15_2833 0.57 +1.3
2,977,270 - HP15_2833 0.71 -0.9
2,977,271 + HP15_2833 0.72 +0.6
2,977,329 + +1.1
2,977,392 + +1.8
2,977,459 + HP15_2834 0.12 -1.3
2,977,459 + HP15_2834 0.12 -0.6
2,977,644 - HP15_2834 0.35 +1.8
2,977,644 - HP15_2834 0.35 -0.0
2,977,681 - HP15_2834 0.39 +1.5
2,977,701 + HP15_2834 0.42 -0.7

Or see this region's nucleotide sequence