Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2761 and HP15_2760 overlap by 4 nucleotides HP15_2760 and HP15_2762 overlap by 80 nucleotides HP15_2762 and HP15_2763 are separated by 104 nucleotides
HP15_2761: HP15_2761 - transcriptional regulator, GntR family with aminotransferase domain protein, at 2,914,029 to 2,915,462
_2761
HP15_2760: HP15_2760 - methyltransferase domain family, at 2,915,459 to 2,916,187
_2760
HP15_2762: HP15_2762 - transcriptional regulator, LysR family protein, at 2,916,108 to 2,917,010
_2762
HP15_2763: HP15_2763 - methyltransferase, UbiE/COQ5 family protein, at 2,917,115 to 2,917,747
_2763
Position (kb)
2915
2916
2917 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2914.474 kb on + strand, within HP15_2761 at 2914.642 kb on + strand, within HP15_2761 at 2914.642 kb on + strand, within HP15_2761 at 2914.642 kb on + strand, within HP15_2761 at 2914.650 kb on - strand, within HP15_2761 at 2914.762 kb on + strand, within HP15_2761 at 2914.785 kb on + strand, within HP15_2761 at 2914.909 kb on - strand, within HP15_2761 at 2914.961 kb on + strand, within HP15_2761 at 2915.034 kb on - strand, within HP15_2761 at 2915.052 kb on - strand, within HP15_2761 at 2915.060 kb on + strand, within HP15_2761 at 2915.060 kb on + strand, within HP15_2761 at 2915.060 kb on + strand, within HP15_2761 at 2915.063 kb on - strand, within HP15_2761 at 2915.065 kb on + strand, within HP15_2761 at 2915.068 kb on - strand, within HP15_2761 at 2915.068 kb on - strand, within HP15_2761 at 2915.078 kb on - strand, within HP15_2761 at 2915.083 kb on - strand, within HP15_2761 at 2915.193 kb on - strand, within HP15_2761 at 2915.298 kb on - strand, within HP15_2761 at 2915.308 kb on - strand, within HP15_2761 at 2915.366 kb on + strand at 2915.421 kb on - strand at 2915.513 kb on + strand at 2915.513 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.719 kb on + strand, within HP15_2760 at 2915.848 kb on + strand, within HP15_2760 at 2916.027 kb on + strand, within HP15_2760 at 2916.178 kb on - strand at 2916.184 kb on - strand at 2916.227 kb on + strand, within HP15_2762 at 2916.257 kb on + strand, within HP15_2762 at 2916.267 kb on + strand, within HP15_2762 at 2916.280 kb on - strand, within HP15_2762 at 2916.302 kb on - strand, within HP15_2762 at 2916.368 kb on + strand, within HP15_2762 at 2916.438 kb on - strand, within HP15_2762 at 2916.488 kb on - strand, within HP15_2762 at 2916.558 kb on + strand, within HP15_2762 at 2916.613 kb on - strand, within HP15_2762 at 2916.792 kb on + strand, within HP15_2762 at 2917.186 kb on - strand, within HP15_2763
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 2,914,474 + HP15_2761 0.31 -0.1 2,914,642 + HP15_2761 0.43 +0.6 2,914,642 + HP15_2761 0.43 -1.7 2,914,642 + HP15_2761 0.43 -1.7 2,914,650 - HP15_2761 0.43 -0.0 2,914,762 + HP15_2761 0.51 +0.4 2,914,785 + HP15_2761 0.53 -1.0 2,914,909 - HP15_2761 0.61 +0.3 2,914,961 + HP15_2761 0.65 -2.3 2,915,034 - HP15_2761 0.70 -0.0 2,915,052 - HP15_2761 0.71 -0.1 2,915,060 + HP15_2761 0.72 -0.9 2,915,060 + HP15_2761 0.72 +0.9 2,915,060 + HP15_2761 0.72 -0.2 2,915,063 - HP15_2761 0.72 -0.6 2,915,065 + HP15_2761 0.72 +0.6 2,915,068 - HP15_2761 0.72 -0.6 2,915,068 - HP15_2761 0.72 +0.9 2,915,078 - HP15_2761 0.73 -0.3 2,915,083 - HP15_2761 0.74 +0.2 2,915,193 - HP15_2761 0.81 +0.5 2,915,298 - HP15_2761 0.88 -1.1 2,915,308 - HP15_2761 0.89 +0.0 2,915,366 + +1.2 2,915,421 - -3.2 2,915,513 + -0.1 2,915,513 + -0.5 2,915,518 + -1.1 2,915,518 + +1.5 2,915,518 + -1.2 2,915,518 + +0.0 2,915,719 + HP15_2760 0.36 -0.4 2,915,848 + HP15_2760 0.53 -0.5 2,916,027 + HP15_2760 0.78 -1.2 2,916,178 - -1.2 2,916,184 - -0.8 2,916,227 + HP15_2762 0.13 +1.0 2,916,257 + HP15_2762 0.17 -1.0 2,916,267 + HP15_2762 0.18 +0.2 2,916,280 - HP15_2762 0.19 -0.9 2,916,302 - HP15_2762 0.21 +0.2 2,916,368 + HP15_2762 0.29 -0.5 2,916,438 - HP15_2762 0.37 -0.0 2,916,488 - HP15_2762 0.42 +0.1 2,916,558 + HP15_2762 0.50 +0.2 2,916,613 - HP15_2762 0.56 -0.8 2,916,792 + HP15_2762 0.76 +1.3 2,917,186 - HP15_2763 0.11 +1.6
Or see this region's nucleotide sequence