Strain Fitness in Marinobacter adhaerens HP15 around HP15_2760

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2761 and HP15_2760 overlap by 4 nucleotidesHP15_2760 and HP15_2762 overlap by 80 nucleotidesHP15_2762 and HP15_2763 are separated by 104 nucleotides HP15_2761: HP15_2761 - transcriptional regulator, GntR family with aminotransferase domain protein, at 2,914,029 to 2,915,462 _2761 HP15_2760: HP15_2760 - methyltransferase domain family, at 2,915,459 to 2,916,187 _2760 HP15_2762: HP15_2762 - transcriptional regulator, LysR family protein, at 2,916,108 to 2,917,010 _2762 HP15_2763: HP15_2763 - methyltransferase, UbiE/COQ5 family protein, at 2,917,115 to 2,917,747 _2763 Position (kb) 2915 2916 2917Strain fitness (log2 ratio) -3 -2 -1 0 1at 2914.474 kb on + strand, within HP15_2761at 2914.642 kb on + strand, within HP15_2761at 2914.642 kb on + strand, within HP15_2761at 2914.642 kb on + strand, within HP15_2761at 2914.650 kb on - strand, within HP15_2761at 2914.762 kb on + strand, within HP15_2761at 2914.785 kb on + strand, within HP15_2761at 2914.909 kb on - strand, within HP15_2761at 2914.961 kb on + strand, within HP15_2761at 2915.034 kb on - strand, within HP15_2761at 2915.052 kb on - strand, within HP15_2761at 2915.060 kb on + strand, within HP15_2761at 2915.060 kb on + strand, within HP15_2761at 2915.060 kb on + strand, within HP15_2761at 2915.063 kb on - strand, within HP15_2761at 2915.065 kb on + strand, within HP15_2761at 2915.068 kb on - strand, within HP15_2761at 2915.068 kb on - strand, within HP15_2761at 2915.078 kb on - strand, within HP15_2761at 2915.083 kb on - strand, within HP15_2761at 2915.193 kb on - strand, within HP15_2761at 2915.298 kb on - strand, within HP15_2761at 2915.308 kb on - strand, within HP15_2761at 2915.366 kb on + strandat 2915.421 kb on - strandat 2915.513 kb on + strandat 2915.513 kb on + strandat 2915.518 kb on + strandat 2915.518 kb on + strandat 2915.518 kb on + strandat 2915.518 kb on + strandat 2915.719 kb on + strand, within HP15_2760at 2915.848 kb on + strand, within HP15_2760at 2916.027 kb on + strand, within HP15_2760at 2916.178 kb on - strandat 2916.184 kb on - strandat 2916.227 kb on + strand, within HP15_2762at 2916.257 kb on + strand, within HP15_2762at 2916.267 kb on + strand, within HP15_2762at 2916.280 kb on - strand, within HP15_2762at 2916.302 kb on - strand, within HP15_2762at 2916.368 kb on + strand, within HP15_2762at 2916.438 kb on - strand, within HP15_2762at 2916.488 kb on - strand, within HP15_2762at 2916.558 kb on + strand, within HP15_2762at 2916.613 kb on - strand, within HP15_2762at 2916.792 kb on + strand, within HP15_2762at 2917.186 kb on - strand, within HP15_2763

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
remove
2,914,474 + HP15_2761 0.31 -0.1
2,914,642 + HP15_2761 0.43 +0.6
2,914,642 + HP15_2761 0.43 -1.7
2,914,642 + HP15_2761 0.43 -1.7
2,914,650 - HP15_2761 0.43 -0.0
2,914,762 + HP15_2761 0.51 +0.4
2,914,785 + HP15_2761 0.53 -1.0
2,914,909 - HP15_2761 0.61 +0.3
2,914,961 + HP15_2761 0.65 -2.3
2,915,034 - HP15_2761 0.70 -0.0
2,915,052 - HP15_2761 0.71 -0.1
2,915,060 + HP15_2761 0.72 -0.9
2,915,060 + HP15_2761 0.72 +0.9
2,915,060 + HP15_2761 0.72 -0.2
2,915,063 - HP15_2761 0.72 -0.6
2,915,065 + HP15_2761 0.72 +0.6
2,915,068 - HP15_2761 0.72 -0.6
2,915,068 - HP15_2761 0.72 +0.9
2,915,078 - HP15_2761 0.73 -0.3
2,915,083 - HP15_2761 0.74 +0.2
2,915,193 - HP15_2761 0.81 +0.5
2,915,298 - HP15_2761 0.88 -1.1
2,915,308 - HP15_2761 0.89 +0.0
2,915,366 + +1.2
2,915,421 - -3.2
2,915,513 + -0.1
2,915,513 + -0.5
2,915,518 + -1.1
2,915,518 + +1.5
2,915,518 + -1.2
2,915,518 + +0.0
2,915,719 + HP15_2760 0.36 -0.4
2,915,848 + HP15_2760 0.53 -0.5
2,916,027 + HP15_2760 0.78 -1.2
2,916,178 - -1.2
2,916,184 - -0.8
2,916,227 + HP15_2762 0.13 +1.0
2,916,257 + HP15_2762 0.17 -1.0
2,916,267 + HP15_2762 0.18 +0.2
2,916,280 - HP15_2762 0.19 -0.9
2,916,302 - HP15_2762 0.21 +0.2
2,916,368 + HP15_2762 0.29 -0.5
2,916,438 - HP15_2762 0.37 -0.0
2,916,488 - HP15_2762 0.42 +0.1
2,916,558 + HP15_2762 0.50 +0.2
2,916,613 - HP15_2762 0.56 -0.8
2,916,792 + HP15_2762 0.76 +1.3
2,917,186 - HP15_2763 0.11 +1.6

Or see this region's nucleotide sequence