Strain Fitness in Marinobacter adhaerens HP15 around HP15_2648

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2647 and HP15_2648 are separated by 32 nucleotidesHP15_2648 and HP15_2649 overlap by 14 nucleotidesHP15_2649 and HP15_2650 overlap by 4 nucleotides HP15_2647: HP15_2647 - peptidoglycan-binding domain 1 protein, at 2,797,459 to 2,799,111 _2647 HP15_2648: HP15_2648 - conserved hypothetical protein, at 2,799,144 to 2,799,596 _2648 HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518 _2649 HP15_2650: HP15_2650 - selenoprotein W-related protein, at 2,800,515 to 2,800,805 _2650 Position (kb) 2799 2800Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2798.155 kb on - strand, within HP15_2647at 2798.175 kb on + strand, within HP15_2647at 2798.398 kb on + strand, within HP15_2647at 2798.425 kb on + strand, within HP15_2647at 2798.495 kb on - strand, within HP15_2647at 2798.517 kb on - strand, within HP15_2647at 2798.573 kb on - strand, within HP15_2647at 2798.617 kb on - strand, within HP15_2647at 2798.633 kb on + strand, within HP15_2647at 2798.904 kb on + strand, within HP15_2647at 2798.991 kb on - strandat 2799.071 kb on - strandat 2799.130 kb on + strandat 2799.279 kb on - strand, within HP15_2648at 2799.399 kb on - strand, within HP15_2648at 2799.401 kb on + strand, within HP15_2648at 2799.460 kb on + strand, within HP15_2648at 2799.545 kb on - strand, within HP15_2648at 2799.545 kb on - strand, within HP15_2648at 2799.545 kb on - strand, within HP15_2648at 2799.552 kb on - strandat 2799.918 kb on - strand, within HP15_2649at 2799.924 kb on - strand, within HP15_2649at 2800.014 kb on + strand, within HP15_2649at 2800.022 kb on - strand, within HP15_2649at 2800.120 kb on - strand, within HP15_2649at 2800.212 kb on + strand, within HP15_2649at 2800.305 kb on - strand, within HP15_2649

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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2,798,155 - HP15_2647 0.42 -2.2
2,798,175 + HP15_2647 0.43 +0.1
2,798,398 + HP15_2647 0.57 +1.7
2,798,425 + HP15_2647 0.58 +1.4
2,798,495 - HP15_2647 0.63 +0.5
2,798,517 - HP15_2647 0.64 -1.1
2,798,573 - HP15_2647 0.67 +0.1
2,798,617 - HP15_2647 0.70 +0.1
2,798,633 + HP15_2647 0.71 +0.8
2,798,904 + HP15_2647 0.87 -1.2
2,798,991 - +0.3
2,799,071 - +1.2
2,799,130 + -0.9
2,799,279 - HP15_2648 0.30 -0.2
2,799,399 - HP15_2648 0.56 +0.6
2,799,401 + HP15_2648 0.57 +0.9
2,799,460 + HP15_2648 0.70 +0.4
2,799,545 - HP15_2648 0.89 -0.9
2,799,545 - HP15_2648 0.89 +1.1
2,799,545 - HP15_2648 0.89 -1.5
2,799,552 - -0.0
2,799,918 - HP15_2649 0.36 +2.8
2,799,924 - HP15_2649 0.36 +1.4
2,800,014 + HP15_2649 0.46 -0.9
2,800,022 - HP15_2649 0.47 +0.1
2,800,120 - HP15_2649 0.57 -0.4
2,800,212 + HP15_2649 0.67 +0.6
2,800,305 - HP15_2649 0.77 +1.5

Or see this region's nucleotide sequence