Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2646 and HP15_2647 are separated by 99 nucleotides HP15_2647 and HP15_2648 are separated by 32 nucleotides HP15_2648 and HP15_2649 overlap by 14 nucleotides
HP15_2646: HP15_2646 - radical SAM domain protein, at 2,796,298 to 2,797,359
_2646
HP15_2647: HP15_2647 - peptidoglycan-binding domain 1 protein, at 2,797,459 to 2,799,111
_2647
HP15_2648: HP15_2648 - conserved hypothetical protein, at 2,799,144 to 2,799,596
_2648
HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518
_2649
Position (kb)
2797
2798
2799
2800 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2796.489 kb on - strand, within HP15_2646 at 2796.545 kb on + strand, within HP15_2646 at 2796.645 kb on - strand, within HP15_2646 at 2796.649 kb on + strand, within HP15_2646 at 2796.806 kb on + strand, within HP15_2646 at 2796.840 kb on + strand, within HP15_2646 at 2796.840 kb on + strand, within HP15_2646 at 2796.848 kb on - strand, within HP15_2646 at 2796.876 kb on - strand, within HP15_2646 at 2796.927 kb on + strand, within HP15_2646 at 2796.945 kb on + strand, within HP15_2646 at 2797.139 kb on + strand, within HP15_2646 at 2797.147 kb on - strand, within HP15_2646 at 2797.187 kb on + strand, within HP15_2646 at 2797.245 kb on - strand, within HP15_2646 at 2797.295 kb on + strand at 2797.351 kb on + strand at 2797.402 kb on + strand at 2797.431 kb on + strand at 2797.694 kb on + strand, within HP15_2647 at 2797.771 kb on - strand, within HP15_2647 at 2797.804 kb on - strand, within HP15_2647 at 2797.823 kb on + strand, within HP15_2647 at 2797.828 kb on - strand, within HP15_2647 at 2798.000 kb on + strand, within HP15_2647 at 2798.028 kb on + strand, within HP15_2647 at 2798.033 kb on + strand, within HP15_2647 at 2798.033 kb on + strand, within HP15_2647 at 2798.080 kb on + strand, within HP15_2647 at 2798.155 kb on - strand, within HP15_2647 at 2798.175 kb on + strand, within HP15_2647 at 2798.398 kb on + strand, within HP15_2647 at 2798.425 kb on + strand, within HP15_2647 at 2798.495 kb on - strand, within HP15_2647 at 2798.517 kb on - strand, within HP15_2647 at 2798.573 kb on - strand, within HP15_2647 at 2798.617 kb on - strand, within HP15_2647 at 2798.633 kb on + strand, within HP15_2647 at 2798.904 kb on + strand, within HP15_2647 at 2798.991 kb on - strand at 2799.071 kb on - strand at 2799.130 kb on + strand at 2799.279 kb on - strand, within HP15_2648 at 2799.399 kb on - strand, within HP15_2648 at 2799.401 kb on + strand, within HP15_2648 at 2799.460 kb on + strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.552 kb on - strand at 2799.918 kb on - strand, within HP15_2649 at 2799.924 kb on - strand, within HP15_2649 at 2800.014 kb on + strand, within HP15_2649 at 2800.022 kb on - strand, within HP15_2649
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 2,796,489 - HP15_2646 0.18 +0.5 2,796,545 + HP15_2646 0.23 -1.2 2,796,645 - HP15_2646 0.33 +0.4 2,796,649 + HP15_2646 0.33 +0.5 2,796,806 + HP15_2646 0.48 -0.2 2,796,840 + HP15_2646 0.51 -0.8 2,796,840 + HP15_2646 0.51 -0.7 2,796,848 - HP15_2646 0.52 +0.3 2,796,876 - HP15_2646 0.54 +0.4 2,796,927 + HP15_2646 0.59 +0.9 2,796,945 + HP15_2646 0.61 -3.3 2,797,139 + HP15_2646 0.79 -0.6 2,797,147 - HP15_2646 0.80 +0.0 2,797,187 + HP15_2646 0.84 -0.4 2,797,245 - HP15_2646 0.89 -1.3 2,797,295 + -0.2 2,797,351 + -0.3 2,797,402 + +0.9 2,797,431 + -2.0 2,797,694 + HP15_2647 0.14 -0.3 2,797,771 - HP15_2647 0.19 -1.2 2,797,804 - HP15_2647 0.21 +0.2 2,797,823 + HP15_2647 0.22 -0.8 2,797,828 - HP15_2647 0.22 +1.4 2,798,000 + HP15_2647 0.33 +1.4 2,798,028 + HP15_2647 0.34 -0.6 2,798,033 + HP15_2647 0.35 -0.2 2,798,033 + HP15_2647 0.35 +0.2 2,798,080 + HP15_2647 0.38 -2.1 2,798,155 - HP15_2647 0.42 -2.2 2,798,175 + HP15_2647 0.43 +0.1 2,798,398 + HP15_2647 0.57 +1.7 2,798,425 + HP15_2647 0.58 +1.4 2,798,495 - HP15_2647 0.63 +0.5 2,798,517 - HP15_2647 0.64 -1.1 2,798,573 - HP15_2647 0.67 +0.1 2,798,617 - HP15_2647 0.70 +0.1 2,798,633 + HP15_2647 0.71 +0.8 2,798,904 + HP15_2647 0.87 -1.2 2,798,991 - +0.3 2,799,071 - +1.2 2,799,130 + -0.9 2,799,279 - HP15_2648 0.30 -0.2 2,799,399 - HP15_2648 0.56 +0.6 2,799,401 + HP15_2648 0.57 +0.9 2,799,460 + HP15_2648 0.70 +0.4 2,799,545 - HP15_2648 0.89 -0.9 2,799,545 - HP15_2648 0.89 +1.1 2,799,545 - HP15_2648 0.89 -1.5 2,799,552 - -0.0 2,799,918 - HP15_2649 0.36 +2.8 2,799,924 - HP15_2649 0.36 +1.4 2,800,014 + HP15_2649 0.46 -0.9 2,800,022 - HP15_2649 0.47 +0.1
Or see this region's nucleotide sequence