Strain Fitness in Marinobacter adhaerens HP15 around HP15_2596

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2595 and HP15_2596 are separated by 20 nucleotidesHP15_2596 and HP15_2597 are separated by 76 nucleotides HP15_2595: HP15_2595 - acyl-CoA synthetase, at 2,742,942 to 2,744,585 _2595 HP15_2596: HP15_2596 - endoribonuclease L-PSP, at 2,744,606 to 2,744,923 _2596 HP15_2597: HP15_2597 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,745,000 to 2,746,904 _2597 Position (kb) 2744 2745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2743.615 kb on - strand, within HP15_2595at 2743.675 kb on - strand, within HP15_2595at 2743.712 kb on + strand, within HP15_2595at 2743.712 kb on + strand, within HP15_2595at 2743.727 kb on + strand, within HP15_2595at 2743.865 kb on - strand, within HP15_2595at 2743.890 kb on - strand, within HP15_2595at 2743.944 kb on + strand, within HP15_2595at 2743.952 kb on - strand, within HP15_2595at 2743.998 kb on - strand, within HP15_2595at 2744.075 kb on + strand, within HP15_2595at 2744.116 kb on - strand, within HP15_2595at 2744.134 kb on + strand, within HP15_2595at 2744.183 kb on + strand, within HP15_2595at 2744.183 kb on + strand, within HP15_2595at 2744.234 kb on + strand, within HP15_2595at 2744.338 kb on - strand, within HP15_2595at 2744.397 kb on + strand, within HP15_2595at 2744.407 kb on + strand, within HP15_2595at 2744.415 kb on - strand, within HP15_2595at 2744.421 kb on + strandat 2744.431 kb on + strandat 2744.431 kb on + strandat 2744.431 kb on + strandat 2744.434 kb on - strandat 2744.439 kb on - strandat 2744.450 kb on - strandat 2744.612 kb on - strandat 2744.661 kb on - strand, within HP15_2596at 2744.688 kb on + strand, within HP15_2596at 2744.791 kb on + strand, within HP15_2596at 2744.879 kb on - strand, within HP15_2596at 2745.023 kb on - strandat 2745.115 kb on + strandat 2745.168 kb on - strandat 2745.168 kb on - strandat 2745.203 kb on - strand, within HP15_2597at 2745.277 kb on + strand, within HP15_2597at 2745.399 kb on - strand, within HP15_2597at 2745.424 kb on - strand, within HP15_2597at 2745.516 kb on + strand, within HP15_2597at 2745.526 kb on + strand, within HP15_2597at 2745.526 kb on + strand, within HP15_2597at 2745.591 kb on - strand, within HP15_2597at 2745.648 kb on - strand, within HP15_2597at 2745.669 kb on - strand, within HP15_2597at 2745.748 kb on - strand, within HP15_2597at 2745.873 kb on + strand, within HP15_2597at 2745.873 kb on + strand, within HP15_2597at 2745.875 kb on + strand, within HP15_2597at 2745.881 kb on - strand, within HP15_2597at 2745.900 kb on + strand, within HP15_2597at 2745.917 kb on + strand, within HP15_2597

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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2,743,615 - HP15_2595 0.41 +0.7
2,743,675 - HP15_2595 0.45 +0.6
2,743,712 + HP15_2595 0.47 -0.4
2,743,712 + HP15_2595 0.47 -1.2
2,743,727 + HP15_2595 0.48 +0.3
2,743,865 - HP15_2595 0.56 -0.5
2,743,890 - HP15_2595 0.58 +0.1
2,743,944 + HP15_2595 0.61 -0.4
2,743,952 - HP15_2595 0.61 -1.0
2,743,998 - HP15_2595 0.64 +0.8
2,744,075 + HP15_2595 0.69 +0.1
2,744,116 - HP15_2595 0.71 -2.0
2,744,134 + HP15_2595 0.73 +1.1
2,744,183 + HP15_2595 0.75 +0.8
2,744,183 + HP15_2595 0.75 +0.5
2,744,234 + HP15_2595 0.79 +0.3
2,744,338 - HP15_2595 0.85 -1.7
2,744,397 + HP15_2595 0.89 -3.1
2,744,407 + HP15_2595 0.89 +1.1
2,744,415 - HP15_2595 0.90 +0.8
2,744,421 + +2.1
2,744,431 + +2.5
2,744,431 + -1.1
2,744,431 + +0.1
2,744,434 - +1.1
2,744,439 - -0.6
2,744,450 - -0.0
2,744,612 - +1.2
2,744,661 - HP15_2596 0.17 +0.5
2,744,688 + HP15_2596 0.26 +0.6
2,744,791 + HP15_2596 0.58 -1.1
2,744,879 - HP15_2596 0.86 -1.3
2,745,023 - -0.9
2,745,115 + -0.7
2,745,168 - -1.3
2,745,168 - -1.2
2,745,203 - HP15_2597 0.11 -1.0
2,745,277 + HP15_2597 0.15 +0.9
2,745,399 - HP15_2597 0.21 -0.7
2,745,424 - HP15_2597 0.22 +2.3
2,745,516 + HP15_2597 0.27 +1.2
2,745,526 + HP15_2597 0.28 +0.0
2,745,526 + HP15_2597 0.28 +0.7
2,745,591 - HP15_2597 0.31 -0.3
2,745,648 - HP15_2597 0.34 -0.9
2,745,669 - HP15_2597 0.35 +2.5
2,745,748 - HP15_2597 0.39 +1.3
2,745,873 + HP15_2597 0.46 +0.4
2,745,873 + HP15_2597 0.46 +1.1
2,745,875 + HP15_2597 0.46 +0.3
2,745,881 - HP15_2597 0.46 -0.3
2,745,900 + HP15_2597 0.47 -0.4
2,745,917 + HP15_2597 0.48 +0.5

Or see this region's nucleotide sequence