Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2595 and HP15_2596 are separated by 20 nucleotides HP15_2596 and HP15_2597 are separated by 76 nucleotides
HP15_2595: HP15_2595 - acyl-CoA synthetase, at 2,742,942 to 2,744,585
_2595
HP15_2596: HP15_2596 - endoribonuclease L-PSP, at 2,744,606 to 2,744,923
_2596
HP15_2597: HP15_2597 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,745,000 to 2,746,904
_2597
Position (kb)
2744
2745 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2743.615 kb on - strand, within HP15_2595 at 2743.675 kb on - strand, within HP15_2595 at 2743.712 kb on + strand, within HP15_2595 at 2743.712 kb on + strand, within HP15_2595 at 2743.727 kb on + strand, within HP15_2595 at 2743.865 kb on - strand, within HP15_2595 at 2743.890 kb on - strand, within HP15_2595 at 2743.944 kb on + strand, within HP15_2595 at 2743.952 kb on - strand, within HP15_2595 at 2743.998 kb on - strand, within HP15_2595 at 2744.075 kb on + strand, within HP15_2595 at 2744.116 kb on - strand, within HP15_2595 at 2744.134 kb on + strand, within HP15_2595 at 2744.183 kb on + strand, within HP15_2595 at 2744.183 kb on + strand, within HP15_2595 at 2744.234 kb on + strand, within HP15_2595 at 2744.338 kb on - strand, within HP15_2595 at 2744.397 kb on + strand, within HP15_2595 at 2744.407 kb on + strand, within HP15_2595 at 2744.415 kb on - strand, within HP15_2595 at 2744.421 kb on + strand at 2744.431 kb on + strand at 2744.431 kb on + strand at 2744.431 kb on + strand at 2744.434 kb on - strand at 2744.439 kb on - strand at 2744.450 kb on - strand at 2744.612 kb on - strand at 2744.661 kb on - strand, within HP15_2596 at 2744.688 kb on + strand, within HP15_2596 at 2744.791 kb on + strand, within HP15_2596 at 2744.879 kb on - strand, within HP15_2596 at 2745.023 kb on - strand at 2745.115 kb on + strand at 2745.168 kb on - strand at 2745.168 kb on - strand at 2745.203 kb on - strand, within HP15_2597 at 2745.277 kb on + strand, within HP15_2597 at 2745.399 kb on - strand, within HP15_2597 at 2745.424 kb on - strand, within HP15_2597 at 2745.516 kb on + strand, within HP15_2597 at 2745.526 kb on + strand, within HP15_2597 at 2745.526 kb on + strand, within HP15_2597 at 2745.591 kb on - strand, within HP15_2597 at 2745.648 kb on - strand, within HP15_2597 at 2745.669 kb on - strand, within HP15_2597 at 2745.748 kb on - strand, within HP15_2597 at 2745.873 kb on + strand, within HP15_2597 at 2745.873 kb on + strand, within HP15_2597 at 2745.875 kb on + strand, within HP15_2597 at 2745.881 kb on - strand, within HP15_2597 at 2745.900 kb on + strand, within HP15_2597 at 2745.917 kb on + strand, within HP15_2597
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 2,743,615 - HP15_2595 0.41 +0.7 2,743,675 - HP15_2595 0.45 +0.6 2,743,712 + HP15_2595 0.47 -0.4 2,743,712 + HP15_2595 0.47 -1.2 2,743,727 + HP15_2595 0.48 +0.3 2,743,865 - HP15_2595 0.56 -0.5 2,743,890 - HP15_2595 0.58 +0.1 2,743,944 + HP15_2595 0.61 -0.4 2,743,952 - HP15_2595 0.61 -1.0 2,743,998 - HP15_2595 0.64 +0.8 2,744,075 + HP15_2595 0.69 +0.1 2,744,116 - HP15_2595 0.71 -2.0 2,744,134 + HP15_2595 0.73 +1.1 2,744,183 + HP15_2595 0.75 +0.8 2,744,183 + HP15_2595 0.75 +0.5 2,744,234 + HP15_2595 0.79 +0.3 2,744,338 - HP15_2595 0.85 -1.7 2,744,397 + HP15_2595 0.89 -3.1 2,744,407 + HP15_2595 0.89 +1.1 2,744,415 - HP15_2595 0.90 +0.8 2,744,421 + +2.1 2,744,431 + +2.5 2,744,431 + -1.1 2,744,431 + +0.1 2,744,434 - +1.1 2,744,439 - -0.6 2,744,450 - -0.0 2,744,612 - +1.2 2,744,661 - HP15_2596 0.17 +0.5 2,744,688 + HP15_2596 0.26 +0.6 2,744,791 + HP15_2596 0.58 -1.1 2,744,879 - HP15_2596 0.86 -1.3 2,745,023 - -0.9 2,745,115 + -0.7 2,745,168 - -1.3 2,745,168 - -1.2 2,745,203 - HP15_2597 0.11 -1.0 2,745,277 + HP15_2597 0.15 +0.9 2,745,399 - HP15_2597 0.21 -0.7 2,745,424 - HP15_2597 0.22 +2.3 2,745,516 + HP15_2597 0.27 +1.2 2,745,526 + HP15_2597 0.28 +0.0 2,745,526 + HP15_2597 0.28 +0.7 2,745,591 - HP15_2597 0.31 -0.3 2,745,648 - HP15_2597 0.34 -0.9 2,745,669 - HP15_2597 0.35 +2.5 2,745,748 - HP15_2597 0.39 +1.3 2,745,873 + HP15_2597 0.46 +0.4 2,745,873 + HP15_2597 0.46 +1.1 2,745,875 + HP15_2597 0.46 +0.3 2,745,881 - HP15_2597 0.46 -0.3 2,745,900 + HP15_2597 0.47 -0.4 2,745,917 + HP15_2597 0.48 +0.5
Or see this region's nucleotide sequence