Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2344 and HP15_2345 are separated by 316 nucleotides HP15_2345 and HP15_tRNA45 are separated by 41 nucleotides HP15_tRNA45 and HP15_tRNA46 are separated by 18 nucleotides HP15_tRNA46 and HP15_tRNA47 are separated by 67 nucleotides HP15_tRNA47 and HP15_2346 are separated by 161 nucleotides HP15_2346 and HP15_2347 are separated by 26 nucleotides
HP15_2344: HP15_2344 - acetyl-CoA acetyltransferase, at 2,466,745 to 2,468,088
_2344
HP15_2345: HP15_2345 - 3-oxoacyl-(acyl-carrier protein) reductase, at 2,468,405 to 2,469,811
_2345
HP15_tRNA45: HP15_tRNA45 - tRNA-Val, at 2,469,853 to 2,469,928
_tRNA45
HP15_tRNA46: HP15_tRNA46 - tRNA-Asp, at 2,469,947 to 2,470,023
_tRNA46
HP15_tRNA47: HP15_tRNA47 - tRNA-Val, at 2,470,091 to 2,470,166
_tRNA47
HP15_2346: HP15_2346 - conserved hypothetical protein, at 2,470,328 to 2,470,609
_2346
HP15_2347: HP15_2347 - conserved hypothetical protein, at 2,470,636 to 2,471,508
_2347
Position (kb)
2468
2469
2470 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2467.435 kb on + strand, within HP15_2344 at 2467.472 kb on - strand, within HP15_2344 at 2467.487 kb on - strand, within HP15_2344 at 2467.535 kb on + strand, within HP15_2344 at 2467.589 kb on + strand, within HP15_2344 at 2467.589 kb on + strand, within HP15_2344 at 2467.600 kb on + strand, within HP15_2344 at 2467.608 kb on - strand, within HP15_2344 at 2467.695 kb on + strand, within HP15_2344 at 2467.753 kb on - strand, within HP15_2344 at 2467.788 kb on + strand, within HP15_2344 at 2467.796 kb on - strand, within HP15_2344 at 2467.879 kb on + strand, within HP15_2344 at 2467.911 kb on + strand, within HP15_2344 at 2467.963 kb on - strand at 2467.963 kb on - strand at 2468.073 kb on + strand at 2468.156 kb on + strand at 2468.238 kb on - strand at 2468.296 kb on - strand at 2468.353 kb on - strand at 2468.414 kb on - strand at 2468.414 kb on - strand at 2468.635 kb on + strand, within HP15_2345 at 2468.753 kb on + strand, within HP15_2345 at 2468.760 kb on - strand, within HP15_2345 at 2468.875 kb on + strand, within HP15_2345 at 2468.875 kb on - strand, within HP15_2345 at 2468.992 kb on - strand, within HP15_2345 at 2469.019 kb on - strand, within HP15_2345 at 2469.247 kb on - strand, within HP15_2345 at 2469.276 kb on - strand, within HP15_2345 at 2469.312 kb on + strand, within HP15_2345 at 2469.343 kb on - strand, within HP15_2345 at 2469.387 kb on - strand, within HP15_2345 at 2469.419 kb on + strand, within HP15_2345 at 2469.442 kb on - strand, within HP15_2345 at 2469.629 kb on + strand, within HP15_2345 at 2469.653 kb on + strand, within HP15_2345 at 2469.687 kb on + strand at 2469.699 kb on - strand at 2470.377 kb on + strand, within HP15_2346
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 2,467,435 + HP15_2344 0.51 +1.3 2,467,472 - HP15_2344 0.54 +0.9 2,467,487 - HP15_2344 0.55 -0.9 2,467,535 + HP15_2344 0.59 +1.1 2,467,589 + HP15_2344 0.63 +0.7 2,467,589 + HP15_2344 0.63 -0.6 2,467,600 + HP15_2344 0.64 +0.1 2,467,608 - HP15_2344 0.64 +0.1 2,467,695 + HP15_2344 0.71 -2.1 2,467,753 - HP15_2344 0.75 -0.1 2,467,788 + HP15_2344 0.78 +0.0 2,467,796 - HP15_2344 0.78 +1.2 2,467,879 + HP15_2344 0.84 -0.3 2,467,911 + HP15_2344 0.87 +0.9 2,467,963 - +0.3 2,467,963 - -0.5 2,468,073 + -0.5 2,468,156 + +0.7 2,468,238 - -1.4 2,468,296 - -0.4 2,468,353 - +0.2 2,468,414 - +1.4 2,468,414 - +1.5 2,468,635 + HP15_2345 0.16 +0.0 2,468,753 + HP15_2345 0.25 +0.7 2,468,760 - HP15_2345 0.25 +0.6 2,468,875 + HP15_2345 0.33 +0.0 2,468,875 - HP15_2345 0.33 -0.4 2,468,992 - HP15_2345 0.42 +1.2 2,469,019 - HP15_2345 0.44 +0.3 2,469,247 - HP15_2345 0.60 -0.6 2,469,276 - HP15_2345 0.62 +0.1 2,469,312 + HP15_2345 0.64 +0.3 2,469,343 - HP15_2345 0.67 -0.2 2,469,387 - HP15_2345 0.70 +1.3 2,469,419 + HP15_2345 0.72 +1.3 2,469,442 - HP15_2345 0.74 +2.2 2,469,629 + HP15_2345 0.87 +0.8 2,469,653 + HP15_2345 0.89 +1.2 2,469,687 + +0.2 2,469,699 - -3.8 2,470,377 + HP15_2346 0.17 -0.2
Or see this region's nucleotide sequence