Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2270 and HP15_2271 are separated by 37 nucleotides HP15_2271 and HP15_2272 overlap by 4 nucleotides HP15_2272 and HP15_2273 overlap by 7 nucleotides
HP15_2270: HP15_2270 - magnesium chelatase subunit I, at 2,394,401 to 2,395,363
_2270
HP15_2271: HP15_2271 - protein containing DUF58, at 2,395,401 to 2,396,342
_2271
HP15_2272: HP15_2272 - conserved hypothetical protein, at 2,396,339 to 2,396,809
_2272
HP15_2273: HP15_2273 - von Willebrand factor type A domain protein, at 2,396,803 to 2,397,831
_2273
Position (kb)
2395
2396
2397 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2394.621 kb on + strand, within HP15_2270 at 2394.621 kb on + strand, within HP15_2270 at 2394.684 kb on + strand, within HP15_2270 at 2394.726 kb on - strand, within HP15_2270 at 2394.798 kb on + strand, within HP15_2270 at 2394.866 kb on - strand, within HP15_2270 at 2394.871 kb on + strand, within HP15_2270 at 2395.172 kb on + strand, within HP15_2270 at 2395.312 kb on - strand at 2395.401 kb on - strand at 2395.440 kb on + strand at 2395.440 kb on + strand at 2395.448 kb on - strand at 2395.505 kb on - strand, within HP15_2271 at 2395.506 kb on + strand, within HP15_2271 at 2395.506 kb on + strand, within HP15_2271 at 2395.643 kb on + strand, within HP15_2271 at 2395.693 kb on + strand, within HP15_2271 at 2395.757 kb on - strand, within HP15_2271 at 2395.776 kb on - strand, within HP15_2271 at 2395.909 kb on - strand, within HP15_2271 at 2395.951 kb on + strand at 2395.980 kb on + strand, within HP15_2271 at 2396.160 kb on + strand, within HP15_2271 at 2396.259 kb on - strand at 2396.283 kb on + strand at 2396.315 kb on + strand at 2396.366 kb on + strand at 2396.435 kb on + strand, within HP15_2272 at 2396.459 kb on + strand, within HP15_2272 at 2396.573 kb on + strand, within HP15_2272 at 2396.621 kb on - strand, within HP15_2272 at 2396.694 kb on + strand, within HP15_2272 at 2396.702 kb on - strand, within HP15_2272 at 2396.735 kb on - strand, within HP15_2272 at 2396.788 kb on + strand at 2396.828 kb on - strand at 2396.841 kb on + strand at 2396.870 kb on + strand at 2396.944 kb on - strand, within HP15_2273 at 2397.022 kb on - strand, within HP15_2273 at 2397.114 kb on + strand, within HP15_2273 at 2397.203 kb on + strand, within HP15_2273 at 2397.217 kb on - strand, within HP15_2273 at 2397.278 kb on - strand, within HP15_2273
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 2,394,621 + HP15_2270 0.23 -1.3 2,394,621 + HP15_2270 0.23 -0.8 2,394,684 + HP15_2270 0.29 -1.5 2,394,726 - HP15_2270 0.34 -0.9 2,394,798 + HP15_2270 0.41 +2.1 2,394,866 - HP15_2270 0.48 +0.4 2,394,871 + HP15_2270 0.49 +0.5 2,395,172 + HP15_2270 0.80 +0.3 2,395,312 - +0.3 2,395,401 - -0.4 2,395,440 + +0.4 2,395,440 + +1.0 2,395,448 - -0.4 2,395,505 - HP15_2271 0.11 +0.9 2,395,506 + HP15_2271 0.11 -1.5 2,395,506 + HP15_2271 0.11 -1.9 2,395,643 + HP15_2271 0.26 -0.8 2,395,693 + HP15_2271 0.31 +0.1 2,395,757 - HP15_2271 0.38 +0.2 2,395,776 - HP15_2271 0.40 +1.3 2,395,909 - HP15_2271 0.54 +1.6 2,395,951 + +1.2 2,395,980 + HP15_2271 0.61 -1.2 2,396,160 + HP15_2271 0.81 -1.0 2,396,259 - -0.0 2,396,283 + -0.1 2,396,315 + -1.2 2,396,366 + +0.6 2,396,435 + HP15_2272 0.20 -1.8 2,396,459 + HP15_2272 0.25 -0.0 2,396,573 + HP15_2272 0.50 +0.5 2,396,621 - HP15_2272 0.60 -0.4 2,396,694 + HP15_2272 0.75 +0.4 2,396,702 - HP15_2272 0.77 +0.1 2,396,735 - HP15_2272 0.84 -1.0 2,396,788 + -1.8 2,396,828 - +0.6 2,396,841 + +1.3 2,396,870 + -4.2 2,396,944 - HP15_2273 0.14 +0.9 2,397,022 - HP15_2273 0.21 +0.9 2,397,114 + HP15_2273 0.30 +1.0 2,397,203 + HP15_2273 0.39 -1.4 2,397,217 - HP15_2273 0.40 +1.1 2,397,278 - HP15_2273 0.46 +0.5
Or see this region's nucleotide sequence