Strain Fitness in Marinobacter adhaerens HP15 around HP15_2271

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2270 and HP15_2271 are separated by 37 nucleotidesHP15_2271 and HP15_2272 overlap by 4 nucleotidesHP15_2272 and HP15_2273 overlap by 7 nucleotides HP15_2270: HP15_2270 - magnesium chelatase subunit I, at 2,394,401 to 2,395,363 _2270 HP15_2271: HP15_2271 - protein containing DUF58, at 2,395,401 to 2,396,342 _2271 HP15_2272: HP15_2272 - conserved hypothetical protein, at 2,396,339 to 2,396,809 _2272 HP15_2273: HP15_2273 - von Willebrand factor type A domain protein, at 2,396,803 to 2,397,831 _2273 Position (kb) 2395 2396 2397Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2394.621 kb on + strand, within HP15_2270at 2394.621 kb on + strand, within HP15_2270at 2394.684 kb on + strand, within HP15_2270at 2394.726 kb on - strand, within HP15_2270at 2394.798 kb on + strand, within HP15_2270at 2394.866 kb on - strand, within HP15_2270at 2394.871 kb on + strand, within HP15_2270at 2395.172 kb on + strand, within HP15_2270at 2395.312 kb on - strandat 2395.401 kb on - strandat 2395.440 kb on + strandat 2395.440 kb on + strandat 2395.448 kb on - strandat 2395.505 kb on - strand, within HP15_2271at 2395.506 kb on + strand, within HP15_2271at 2395.506 kb on + strand, within HP15_2271at 2395.643 kb on + strand, within HP15_2271at 2395.693 kb on + strand, within HP15_2271at 2395.757 kb on - strand, within HP15_2271at 2395.776 kb on - strand, within HP15_2271at 2395.909 kb on - strand, within HP15_2271at 2395.951 kb on + strandat 2395.980 kb on + strand, within HP15_2271at 2396.160 kb on + strand, within HP15_2271at 2396.259 kb on - strandat 2396.283 kb on + strandat 2396.315 kb on + strandat 2396.366 kb on + strandat 2396.435 kb on + strand, within HP15_2272at 2396.459 kb on + strand, within HP15_2272at 2396.573 kb on + strand, within HP15_2272at 2396.621 kb on - strand, within HP15_2272at 2396.694 kb on + strand, within HP15_2272at 2396.702 kb on - strand, within HP15_2272at 2396.735 kb on - strand, within HP15_2272at 2396.788 kb on + strandat 2396.828 kb on - strandat 2396.841 kb on + strandat 2396.870 kb on + strandat 2396.944 kb on - strand, within HP15_2273at 2397.022 kb on - strand, within HP15_2273at 2397.114 kb on + strand, within HP15_2273at 2397.203 kb on + strand, within HP15_2273at 2397.217 kb on - strand, within HP15_2273at 2397.278 kb on - strand, within HP15_2273

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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2,394,621 + HP15_2270 0.23 -1.3
2,394,621 + HP15_2270 0.23 -0.8
2,394,684 + HP15_2270 0.29 -1.5
2,394,726 - HP15_2270 0.34 -0.9
2,394,798 + HP15_2270 0.41 +2.1
2,394,866 - HP15_2270 0.48 +0.4
2,394,871 + HP15_2270 0.49 +0.5
2,395,172 + HP15_2270 0.80 +0.3
2,395,312 - +0.3
2,395,401 - -0.4
2,395,440 + +0.4
2,395,440 + +1.0
2,395,448 - -0.4
2,395,505 - HP15_2271 0.11 +0.9
2,395,506 + HP15_2271 0.11 -1.5
2,395,506 + HP15_2271 0.11 -1.9
2,395,643 + HP15_2271 0.26 -0.8
2,395,693 + HP15_2271 0.31 +0.1
2,395,757 - HP15_2271 0.38 +0.2
2,395,776 - HP15_2271 0.40 +1.3
2,395,909 - HP15_2271 0.54 +1.6
2,395,951 + +1.2
2,395,980 + HP15_2271 0.61 -1.2
2,396,160 + HP15_2271 0.81 -1.0
2,396,259 - -0.0
2,396,283 + -0.1
2,396,315 + -1.2
2,396,366 + +0.6
2,396,435 + HP15_2272 0.20 -1.8
2,396,459 + HP15_2272 0.25 -0.0
2,396,573 + HP15_2272 0.50 +0.5
2,396,621 - HP15_2272 0.60 -0.4
2,396,694 + HP15_2272 0.75 +0.4
2,396,702 - HP15_2272 0.77 +0.1
2,396,735 - HP15_2272 0.84 -1.0
2,396,788 + -1.8
2,396,828 - +0.6
2,396,841 + +1.3
2,396,870 + -4.2
2,396,944 - HP15_2273 0.14 +0.9
2,397,022 - HP15_2273 0.21 +0.9
2,397,114 + HP15_2273 0.30 +1.0
2,397,203 + HP15_2273 0.39 -1.4
2,397,217 - HP15_2273 0.40 +1.1
2,397,278 - HP15_2273 0.46 +0.5

Or see this region's nucleotide sequence