Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2190 and HP15_2192 overlap by 4 nucleotides HP15_2192 and HP15_2193 are separated by 39 nucleotides HP15_2193 and HP15_2194 are separated by 38 nucleotides
HP15_2190: HP15_2190 - peptidyl-prolyl cis-trans isomerase B, at 2,308,902 to 2,309,402
_2190
HP15_2192: HP15_2192 - UDP-2,3-diacylglucosamine hydrolase, at 2,309,399 to 2,310,124
_2192
HP15_2193: HP15_2193 - amino-acid ABC transporter ATP-binding protein-like protein, at 2,310,164 to 2,310,934
_2193
HP15_2194: HP15_2194 - amino acid ABC transporter, permease protein, at 2,310,973 to 2,312,061
_2194
Position (kb)
2310
2311 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2309.220 kb on + strand, within HP15_2190 at 2309.296 kb on + strand, within HP15_2190 at 2310.281 kb on + strand, within HP15_2193 at 2310.321 kb on - strand, within HP15_2193 at 2310.423 kb on + strand, within HP15_2193 at 2310.429 kb on + strand, within HP15_2193 at 2310.466 kb on + strand, within HP15_2193 at 2310.516 kb on + strand, within HP15_2193 at 2310.551 kb on + strand, within HP15_2193 at 2310.738 kb on - strand, within HP15_2193 at 2310.753 kb on + strand, within HP15_2193 at 2310.760 kb on + strand, within HP15_2193 at 2310.965 kb on - strand at 2310.984 kb on - strand at 2310.987 kb on - strand at 2311.117 kb on - strand, within HP15_2194 at 2311.122 kb on - strand, within HP15_2194 at 2311.122 kb on - strand, within HP15_2194 at 2311.124 kb on + strand, within HP15_2194 at 2311.124 kb on + strand, within HP15_2194 at 2311.132 kb on - strand, within HP15_2194 at 2311.177 kb on - strand, within HP15_2194 at 2311.261 kb on + strand, within HP15_2194 at 2311.356 kb on + strand, within HP15_2194 at 2311.358 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.593 kb on + strand, within HP15_2194 at 2311.615 kb on + strand, within HP15_2194 at 2311.703 kb on - strand, within HP15_2194 at 2311.737 kb on - strand, within HP15_2194 at 2311.857 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 2,309,220 + HP15_2190 0.63 +1.0 2,309,296 + HP15_2190 0.79 +1.0 2,310,281 + HP15_2193 0.15 -0.2 2,310,321 - HP15_2193 0.20 -2.5 2,310,423 + HP15_2193 0.34 -0.2 2,310,429 + HP15_2193 0.34 -1.4 2,310,466 + HP15_2193 0.39 -1.9 2,310,516 + HP15_2193 0.46 -2.2 2,310,551 + HP15_2193 0.50 -0.9 2,310,738 - HP15_2193 0.74 -1.0 2,310,753 + HP15_2193 0.76 -1.9 2,310,760 + HP15_2193 0.77 -1.6 2,310,965 - -1.1 2,310,984 - -0.3 2,310,987 - -3.7 2,311,117 - HP15_2194 0.13 -1.2 2,311,122 - HP15_2194 0.14 +0.3 2,311,122 - HP15_2194 0.14 +2.0 2,311,124 + HP15_2194 0.14 -1.0 2,311,124 + HP15_2194 0.14 +0.4 2,311,132 - HP15_2194 0.15 -0.6 2,311,177 - HP15_2194 0.19 -2.0 2,311,261 + HP15_2194 0.26 -0.2 2,311,356 + HP15_2194 0.35 +0.1 2,311,358 - HP15_2194 0.35 +0.0 2,311,364 - HP15_2194 0.36 -0.4 2,311,364 - HP15_2194 0.36 -1.6 2,311,364 - HP15_2194 0.36 +0.1 2,311,364 - HP15_2194 0.36 -0.9 2,311,364 - HP15_2194 0.36 -2.4 2,311,593 + HP15_2194 0.57 -1.2 2,311,615 + HP15_2194 0.59 -0.1 2,311,703 - HP15_2194 0.67 +0.3 2,311,737 - HP15_2194 0.70 -0.2 2,311,857 + HP15_2194 0.81 -0.9 2,311,923 + HP15_2194 0.87 -0.6 2,311,923 + HP15_2194 0.87 -1.4 2,311,923 + HP15_2194 0.87 -0.3 2,311,931 - HP15_2194 0.88 +0.1 2,311,931 - HP15_2194 0.88 +1.8 2,311,931 - HP15_2194 0.88 +1.0
Or see this region's nucleotide sequence