Strain Fitness in Marinobacter adhaerens HP15 around HP15_2193

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2190 and HP15_2192 overlap by 4 nucleotidesHP15_2192 and HP15_2193 are separated by 39 nucleotidesHP15_2193 and HP15_2194 are separated by 38 nucleotides HP15_2190: HP15_2190 - peptidyl-prolyl cis-trans isomerase B, at 2,308,902 to 2,309,402 _2190 HP15_2192: HP15_2192 - UDP-2,3-diacylglucosamine hydrolase, at 2,309,399 to 2,310,124 _2192 HP15_2193: HP15_2193 - amino-acid ABC transporter ATP-binding protein-like protein, at 2,310,164 to 2,310,934 _2193 HP15_2194: HP15_2194 - amino acid ABC transporter, permease protein, at 2,310,973 to 2,312,061 _2194 Position (kb) 2310 2311Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2309.220 kb on + strand, within HP15_2190at 2309.296 kb on + strand, within HP15_2190at 2310.281 kb on + strand, within HP15_2193at 2310.321 kb on - strand, within HP15_2193at 2310.423 kb on + strand, within HP15_2193at 2310.429 kb on + strand, within HP15_2193at 2310.466 kb on + strand, within HP15_2193at 2310.516 kb on + strand, within HP15_2193at 2310.551 kb on + strand, within HP15_2193at 2310.738 kb on - strand, within HP15_2193at 2310.753 kb on + strand, within HP15_2193at 2310.760 kb on + strand, within HP15_2193at 2310.965 kb on - strandat 2310.984 kb on - strandat 2310.987 kb on - strandat 2311.117 kb on - strand, within HP15_2194at 2311.122 kb on - strand, within HP15_2194at 2311.122 kb on - strand, within HP15_2194at 2311.124 kb on + strand, within HP15_2194at 2311.124 kb on + strand, within HP15_2194at 2311.132 kb on - strand, within HP15_2194at 2311.177 kb on - strand, within HP15_2194at 2311.261 kb on + strand, within HP15_2194at 2311.356 kb on + strand, within HP15_2194at 2311.358 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.593 kb on + strand, within HP15_2194at 2311.615 kb on + strand, within HP15_2194at 2311.703 kb on - strand, within HP15_2194at 2311.737 kb on - strand, within HP15_2194at 2311.857 kb on + strand, within HP15_2194at 2311.923 kb on + strand, within HP15_2194at 2311.923 kb on + strand, within HP15_2194at 2311.923 kb on + strand, within HP15_2194at 2311.931 kb on - strand, within HP15_2194at 2311.931 kb on - strand, within HP15_2194at 2311.931 kb on - strand, within HP15_2194

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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2,309,220 + HP15_2190 0.63 +1.0
2,309,296 + HP15_2190 0.79 +1.0
2,310,281 + HP15_2193 0.15 -0.2
2,310,321 - HP15_2193 0.20 -2.5
2,310,423 + HP15_2193 0.34 -0.2
2,310,429 + HP15_2193 0.34 -1.4
2,310,466 + HP15_2193 0.39 -1.9
2,310,516 + HP15_2193 0.46 -2.2
2,310,551 + HP15_2193 0.50 -0.9
2,310,738 - HP15_2193 0.74 -1.0
2,310,753 + HP15_2193 0.76 -1.9
2,310,760 + HP15_2193 0.77 -1.6
2,310,965 - -1.1
2,310,984 - -0.3
2,310,987 - -3.7
2,311,117 - HP15_2194 0.13 -1.2
2,311,122 - HP15_2194 0.14 +0.3
2,311,122 - HP15_2194 0.14 +2.0
2,311,124 + HP15_2194 0.14 -1.0
2,311,124 + HP15_2194 0.14 +0.4
2,311,132 - HP15_2194 0.15 -0.6
2,311,177 - HP15_2194 0.19 -2.0
2,311,261 + HP15_2194 0.26 -0.2
2,311,356 + HP15_2194 0.35 +0.1
2,311,358 - HP15_2194 0.35 +0.0
2,311,364 - HP15_2194 0.36 -0.4
2,311,364 - HP15_2194 0.36 -1.6
2,311,364 - HP15_2194 0.36 +0.1
2,311,364 - HP15_2194 0.36 -0.9
2,311,364 - HP15_2194 0.36 -2.4
2,311,593 + HP15_2194 0.57 -1.2
2,311,615 + HP15_2194 0.59 -0.1
2,311,703 - HP15_2194 0.67 +0.3
2,311,737 - HP15_2194 0.70 -0.2
2,311,857 + HP15_2194 0.81 -0.9
2,311,923 + HP15_2194 0.87 -0.6
2,311,923 + HP15_2194 0.87 -1.4
2,311,923 + HP15_2194 0.87 -0.3
2,311,931 - HP15_2194 0.88 +0.1
2,311,931 - HP15_2194 0.88 +1.8
2,311,931 - HP15_2194 0.88 +1.0

Or see this region's nucleotide sequence