Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1867 and HP15_1868 are separated by 44 nucleotides HP15_1868 and HP15_1869 are separated by 62 nucleotides HP15_1869 and HP15_1870 are separated by 57 nucleotides HP15_1870 and HP15_1871 are separated by 0 nucleotides HP15_1871 and HP15_1872 overlap by 11 nucleotides
HP15_1867: HP15_1867 - biopolymer transport protein, at 1,973,397 to 1,973,837
_1867
HP15_1868: HP15_1868 - biopolymer transport protein ExbD/TolR, at 1,973,882 to 1,974,346
_1868
HP15_1869: HP15_1869 - biopolymer transport protein, at 1,974,409 to 1,974,990
_1869
HP15_1870: HP15_1870 - conserved hypothetical protein, secreted, at 1,975,048 to 1,975,395
_1870
HP15_1871: HP15_1871 - TPR repeat protein, at 1,975,396 to 1,975,878
_1871
HP15_1872: HP15_1872 - tetratricopeptide TPR_2 repeat protein, at 1,975,868 to 1,978,639
_1872
Position (kb)
1974
1975 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1973.427 kb on + strand at 1973.460 kb on + strand, within HP15_1867 at 1973.468 kb on - strand, within HP15_1867 at 1973.468 kb on - strand, within HP15_1867 at 1973.614 kb on + strand, within HP15_1867 at 1973.632 kb on + strand, within HP15_1867 at 1973.806 kb on - strand at 1973.821 kb on + strand at 1973.822 kb on - strand at 1973.886 kb on - strand at 1973.886 kb on - strand at 1973.937 kb on + strand, within HP15_1868 at 1973.976 kb on - strand, within HP15_1868 at 1974.037 kb on + strand, within HP15_1868 at 1974.045 kb on - strand, within HP15_1868 at 1974.117 kb on + strand, within HP15_1868 at 1974.130 kb on - strand, within HP15_1868 at 1974.349 kb on + strand at 1974.385 kb on + strand at 1974.425 kb on + strand at 1974.486 kb on + strand, within HP15_1869 at 1974.492 kb on - strand, within HP15_1869 at 1974.492 kb on - strand, within HP15_1869 at 1974.676 kb on - strand, within HP15_1869 at 1974.681 kb on - strand, within HP15_1869 at 1974.772 kb on + strand, within HP15_1869 at 1974.820 kb on + strand, within HP15_1869 at 1974.988 kb on + strand at 1975.021 kb on + strand at 1975.039 kb on + strand at 1975.203 kb on + strand, within HP15_1870 at 1975.203 kb on + strand, within HP15_1870 at 1975.211 kb on - strand, within HP15_1870 at 1975.490 kb on - strand, within HP15_1871 at 1975.491 kb on - strand, within HP15_1871 at 1975.604 kb on + strand, within HP15_1871 at 1975.657 kb on + strand, within HP15_1871 at 1975.676 kb on + strand, within HP15_1871 at 1975.951 kb on + strand at 1975.959 kb on - strand at 1975.976 kb on - strand at 1975.984 kb on - strand at 1975.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 1,973,427 + +0.3 1,973,460 + HP15_1867 0.14 +1.9 1,973,468 - HP15_1867 0.16 +0.1 1,973,468 - HP15_1867 0.16 -0.2 1,973,614 + HP15_1867 0.49 -0.0 1,973,632 + HP15_1867 0.53 -1.2 1,973,806 - -1.8 1,973,821 + +0.0 1,973,822 - +1.2 1,973,886 - +1.0 1,973,886 - +0.1 1,973,937 + HP15_1868 0.12 +0.5 1,973,976 - HP15_1868 0.20 -0.5 1,974,037 + HP15_1868 0.33 -0.7 1,974,045 - HP15_1868 0.35 +0.7 1,974,117 + HP15_1868 0.51 +2.2 1,974,130 - HP15_1868 0.53 +2.6 1,974,349 + +0.5 1,974,385 + +0.6 1,974,425 + -0.3 1,974,486 + HP15_1869 0.13 +1.8 1,974,492 - HP15_1869 0.14 +0.6 1,974,492 - HP15_1869 0.14 +1.5 1,974,676 - HP15_1869 0.46 +1.0 1,974,681 - HP15_1869 0.47 +1.6 1,974,772 + HP15_1869 0.62 +0.2 1,974,820 + HP15_1869 0.71 +0.9 1,974,988 + -2.4 1,975,021 + +0.7 1,975,039 + -2.2 1,975,203 + HP15_1870 0.45 +1.3 1,975,203 + HP15_1870 0.45 -0.4 1,975,211 - HP15_1870 0.47 +1.9 1,975,490 - HP15_1871 0.19 +0.7 1,975,491 - HP15_1871 0.20 +0.8 1,975,604 + HP15_1871 0.43 +0.7 1,975,657 + HP15_1871 0.54 -1.1 1,975,676 + HP15_1871 0.58 +0.3 1,975,951 + +0.8 1,975,959 - -0.5 1,975,976 - +1.7 1,975,984 - +1.4 1,975,984 - +0.7
Or see this region's nucleotide sequence