Strain Fitness in Marinobacter adhaerens HP15 around HP15_1869

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1867 and HP15_1868 are separated by 44 nucleotidesHP15_1868 and HP15_1869 are separated by 62 nucleotidesHP15_1869 and HP15_1870 are separated by 57 nucleotidesHP15_1870 and HP15_1871 are separated by 0 nucleotidesHP15_1871 and HP15_1872 overlap by 11 nucleotides HP15_1867: HP15_1867 - biopolymer transport protein, at 1,973,397 to 1,973,837 _1867 HP15_1868: HP15_1868 - biopolymer transport protein ExbD/TolR, at 1,973,882 to 1,974,346 _1868 HP15_1869: HP15_1869 - biopolymer transport protein, at 1,974,409 to 1,974,990 _1869 HP15_1870: HP15_1870 - conserved hypothetical protein, secreted, at 1,975,048 to 1,975,395 _1870 HP15_1871: HP15_1871 - TPR repeat protein, at 1,975,396 to 1,975,878 _1871 HP15_1872: HP15_1872 - tetratricopeptide TPR_2 repeat protein, at 1,975,868 to 1,978,639 _1872 Position (kb) 1974 1975Strain fitness (log2 ratio) -2 -1 0 1 2at 1973.427 kb on + strandat 1973.460 kb on + strand, within HP15_1867at 1973.468 kb on - strand, within HP15_1867at 1973.468 kb on - strand, within HP15_1867at 1973.614 kb on + strand, within HP15_1867at 1973.632 kb on + strand, within HP15_1867at 1973.806 kb on - strandat 1973.821 kb on + strandat 1973.822 kb on - strandat 1973.886 kb on - strandat 1973.886 kb on - strandat 1973.937 kb on + strand, within HP15_1868at 1973.976 kb on - strand, within HP15_1868at 1974.037 kb on + strand, within HP15_1868at 1974.045 kb on - strand, within HP15_1868at 1974.117 kb on + strand, within HP15_1868at 1974.130 kb on - strand, within HP15_1868at 1974.349 kb on + strandat 1974.385 kb on + strandat 1974.425 kb on + strandat 1974.486 kb on + strand, within HP15_1869at 1974.492 kb on - strand, within HP15_1869at 1974.492 kb on - strand, within HP15_1869at 1974.676 kb on - strand, within HP15_1869at 1974.681 kb on - strand, within HP15_1869at 1974.772 kb on + strand, within HP15_1869at 1974.820 kb on + strand, within HP15_1869at 1974.988 kb on + strandat 1975.021 kb on + strandat 1975.039 kb on + strandat 1975.203 kb on + strand, within HP15_1870at 1975.203 kb on + strand, within HP15_1870at 1975.211 kb on - strand, within HP15_1870at 1975.490 kb on - strand, within HP15_1871at 1975.491 kb on - strand, within HP15_1871at 1975.604 kb on + strand, within HP15_1871at 1975.657 kb on + strand, within HP15_1871at 1975.676 kb on + strand, within HP15_1871at 1975.951 kb on + strandat 1975.959 kb on - strandat 1975.976 kb on - strandat 1975.984 kb on - strandat 1975.984 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
remove
1,973,427 + +0.3
1,973,460 + HP15_1867 0.14 +1.9
1,973,468 - HP15_1867 0.16 +0.1
1,973,468 - HP15_1867 0.16 -0.2
1,973,614 + HP15_1867 0.49 -0.0
1,973,632 + HP15_1867 0.53 -1.2
1,973,806 - -1.8
1,973,821 + +0.0
1,973,822 - +1.2
1,973,886 - +1.0
1,973,886 - +0.1
1,973,937 + HP15_1868 0.12 +0.5
1,973,976 - HP15_1868 0.20 -0.5
1,974,037 + HP15_1868 0.33 -0.7
1,974,045 - HP15_1868 0.35 +0.7
1,974,117 + HP15_1868 0.51 +2.2
1,974,130 - HP15_1868 0.53 +2.6
1,974,349 + +0.5
1,974,385 + +0.6
1,974,425 + -0.3
1,974,486 + HP15_1869 0.13 +1.8
1,974,492 - HP15_1869 0.14 +0.6
1,974,492 - HP15_1869 0.14 +1.5
1,974,676 - HP15_1869 0.46 +1.0
1,974,681 - HP15_1869 0.47 +1.6
1,974,772 + HP15_1869 0.62 +0.2
1,974,820 + HP15_1869 0.71 +0.9
1,974,988 + -2.4
1,975,021 + +0.7
1,975,039 + -2.2
1,975,203 + HP15_1870 0.45 +1.3
1,975,203 + HP15_1870 0.45 -0.4
1,975,211 - HP15_1870 0.47 +1.9
1,975,490 - HP15_1871 0.19 +0.7
1,975,491 - HP15_1871 0.20 +0.8
1,975,604 + HP15_1871 0.43 +0.7
1,975,657 + HP15_1871 0.54 -1.1
1,975,676 + HP15_1871 0.58 +0.3
1,975,951 + +0.8
1,975,959 - -0.5
1,975,976 - +1.7
1,975,984 - +1.4
1,975,984 - +0.7

Or see this region's nucleotide sequence