Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1693 and HP15_1694 are separated by 262 nucleotides HP15_1694 and HP15_1695 are separated by 110 nucleotides HP15_1695 and HP15_1696 are separated by 183 nucleotides HP15_1696 and HP15_1697 are separated by 2 nucleotides
HP15_1693: HP15_1693 - conserved hypothetical protein, at 1,782,917 to 1,783,720
_1693
HP15_1694: HP15_1694 - conserved hypothetical protein, at 1,783,983 to 1,785,311
_1694
HP15_1695: HP15_1695 - protein containing zinc finger, DksA/TraR C4-type domain, at 1,785,422 to 1,785,688
_1695
HP15_1696: HP15_1696 - transcriptional regulator, MerR family, at 1,785,872 to 1,786,288
_1696
HP15_1697: HP15_1697 - conserved hypothetical protein, at 1,786,291 to 1,787,217
_1697
Position (kb)
1783
1784
1785
1786 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1783.052 kb on - strand, within HP15_1693 at 1783.249 kb on - strand, within HP15_1693 at 1783.303 kb on - strand, within HP15_1693 at 1783.328 kb on - strand, within HP15_1693 at 1783.555 kb on - strand, within HP15_1693 at 1783.645 kb on + strand at 1783.648 kb on - strand at 1783.652 kb on + strand at 1783.659 kb on + strand at 1783.665 kb on - strand at 1783.685 kb on - strand at 1783.723 kb on + strand at 1783.822 kb on + strand at 1783.822 kb on + strand at 1783.822 kb on + strand at 1783.859 kb on - strand at 1783.859 kb on - strand at 1784.207 kb on + strand, within HP15_1694 at 1784.259 kb on + strand, within HP15_1694 at 1784.267 kb on - strand, within HP15_1694 at 1784.267 kb on - strand, within HP15_1694 at 1784.295 kb on + strand, within HP15_1694 at 1784.295 kb on + strand, within HP15_1694 at 1784.295 kb on + strand, within HP15_1694 at 1784.303 kb on - strand, within HP15_1694 at 1784.378 kb on - strand, within HP15_1694 at 1784.520 kb on + strand, within HP15_1694 at 1784.527 kb on - strand, within HP15_1694 at 1784.567 kb on + strand, within HP15_1694 at 1784.643 kb on + strand, within HP15_1694 at 1784.653 kb on + strand, within HP15_1694 at 1784.653 kb on + strand, within HP15_1694 at 1784.661 kb on - strand, within HP15_1694 at 1784.661 kb on - strand, within HP15_1694 at 1784.714 kb on - strand, within HP15_1694 at 1784.791 kb on + strand, within HP15_1694 at 1784.797 kb on - strand, within HP15_1694 at 1785.108 kb on + strand, within HP15_1694 at 1785.119 kb on + strand, within HP15_1694 at 1785.202 kb on + strand at 1785.507 kb on + strand, within HP15_1695 at 1785.516 kb on - strand, within HP15_1695 at 1785.688 kb on + strand at 1786.023 kb on - strand, within HP15_1696 at 1786.057 kb on + strand, within HP15_1696 at 1786.065 kb on - strand, within HP15_1696 at 1786.198 kb on - strand, within HP15_1696 at 1786.274 kb on - strand at 1786.289 kb on + strand at 1786.295 kb on - strand at 1786.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 1,783,052 - HP15_1693 0.17 +0.0 1,783,249 - HP15_1693 0.41 +0.6 1,783,303 - HP15_1693 0.48 -0.1 1,783,328 - HP15_1693 0.51 +0.6 1,783,555 - HP15_1693 0.79 +0.1 1,783,645 + +0.6 1,783,648 - +0.6 1,783,652 + -0.1 1,783,659 + -1.8 1,783,665 - +0.1 1,783,685 - +0.6 1,783,723 + +1.2 1,783,822 + +1.6 1,783,822 + +0.3 1,783,822 + +1.9 1,783,859 - -0.9 1,783,859 - +0.3 1,784,207 + HP15_1694 0.17 +0.5 1,784,259 + HP15_1694 0.21 +1.2 1,784,267 - HP15_1694 0.21 +1.3 1,784,267 - HP15_1694 0.21 -0.3 1,784,295 + HP15_1694 0.23 +1.4 1,784,295 + HP15_1694 0.23 +0.9 1,784,295 + HP15_1694 0.23 +0.9 1,784,303 - HP15_1694 0.24 -0.0 1,784,378 - HP15_1694 0.30 -0.5 1,784,520 + HP15_1694 0.40 +1.4 1,784,527 - HP15_1694 0.41 +0.9 1,784,567 + HP15_1694 0.44 +0.2 1,784,643 + HP15_1694 0.50 -0.3 1,784,653 + HP15_1694 0.50 +0.3 1,784,653 + HP15_1694 0.50 +1.3 1,784,661 - HP15_1694 0.51 -0.5 1,784,661 - HP15_1694 0.51 +0.2 1,784,714 - HP15_1694 0.55 +0.4 1,784,791 + HP15_1694 0.61 +0.2 1,784,797 - HP15_1694 0.61 +0.4 1,785,108 + HP15_1694 0.85 -0.4 1,785,119 + HP15_1694 0.85 +1.7 1,785,202 + +1.4 1,785,507 + HP15_1695 0.32 -0.1 1,785,516 - HP15_1695 0.35 -0.2 1,785,688 + -0.1 1,786,023 - HP15_1696 0.36 -0.2 1,786,057 + HP15_1696 0.44 +0.5 1,786,065 - HP15_1696 0.46 -0.5 1,786,198 - HP15_1696 0.78 +0.5 1,786,274 - +0.0 1,786,289 + -0.7 1,786,295 - -0.3 1,786,295 - -0.3
Or see this region's nucleotide sequence