Strain Fitness in Marinobacter adhaerens HP15 around HP15_tRNA31

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1572 and HP15_tRNA31 are separated by 224 nucleotidesHP15_tRNA31 and HP15_tRNA32 are separated by 60 nucleotidesHP15_tRNA32 and HP15_1573 are separated by 168 nucleotides HP15_1572: HP15_1572 - ABC transporter, permease protein, at 1,652,431 to 1,653,597 _1572 HP15_tRNA31: HP15_tRNA31 - tRNA-Gly, at 1,653,822 to 1,653,897 _tRNA31 HP15_tRNA32: HP15_tRNA32 - tRNA-Cys, at 1,653,958 to 1,654,031 _tRNA32 HP15_1573: HP15_1573 - formate dehydrogenase, beta subunit, at 1,654,200 to 1,655,915 _1573 Position (kb) 1653 1654Strain fitness (log2 ratio) -1 0 1at 1652.844 kb on + strand, within HP15_1572at 1652.996 kb on - strand, within HP15_1572at 1653.121 kb on + strand, within HP15_1572at 1653.121 kb on + strand, within HP15_1572at 1653.231 kb on + strand, within HP15_1572at 1653.530 kb on - strandat 1653.582 kb on + strandat 1653.582 kb on + strandat 1653.590 kb on - strandat 1653.646 kb on - strandat 1654.562 kb on + strand, within HP15_1573at 1654.562 kb on + strand, within HP15_1573at 1654.582 kb on + strand, within HP15_1573at 1654.593 kb on + strand, within HP15_1573at 1654.593 kb on + strand, within HP15_1573at 1654.601 kb on - strand, within HP15_1573at 1654.601 kb on - strand, within HP15_1573at 1654.601 kb on - strand, within HP15_1573at 1654.730 kb on - strand, within HP15_1573

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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1,652,844 + HP15_1572 0.35 +0.1
1,652,996 - HP15_1572 0.48 +0.9
1,653,121 + HP15_1572 0.59 +0.7
1,653,121 + HP15_1572 0.59 +0.3
1,653,231 + HP15_1572 0.69 +1.7
1,653,530 - +0.1
1,653,582 + -0.0
1,653,582 + -0.4
1,653,590 - -0.8
1,653,646 - -0.7
1,654,562 + HP15_1573 0.21 -0.8
1,654,562 + HP15_1573 0.21 -0.3
1,654,582 + HP15_1573 0.22 +1.0
1,654,593 + HP15_1573 0.23 -0.6
1,654,593 + HP15_1573 0.23 +1.0
1,654,601 - HP15_1573 0.23 -0.5
1,654,601 - HP15_1573 0.23 +0.0
1,654,601 - HP15_1573 0.23 +0.1
1,654,730 - HP15_1573 0.31 +0.2

Or see this region's nucleotide sequence