Strain Fitness in Marinobacter adhaerens HP15 around HP15_1571

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1570 and HP15_1571 are separated by 2 nucleotidesHP15_1571 and HP15_1572 overlap by 4 nucleotides HP15_1570: HP15_1570 - mammalian cell entry related domain protein, at 1,650,654 to 1,651,592 _1570 HP15_1571: HP15_1571 - ATP-binding component of ABC transporter, at 1,651,595 to 1,652,434 _1571 HP15_1572: HP15_1572 - ABC transporter, permease protein, at 1,652,431 to 1,653,597 _1572 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1650.604 kb on + strandat 1650.604 kb on + strandat 1650.609 kb on + strandat 1650.746 kb on + strandat 1650.761 kb on + strand, within HP15_1570at 1650.790 kb on - strand, within HP15_1570at 1650.848 kb on + strand, within HP15_1570at 1650.853 kb on + strand, within HP15_1570at 1651.006 kb on + strand, within HP15_1570at 1651.116 kb on + strand, within HP15_1570at 1651.116 kb on + strand, within HP15_1570at 1651.257 kb on - strand, within HP15_1570at 1651.384 kb on + strand, within HP15_1570at 1651.432 kb on + strand, within HP15_1570at 1651.440 kb on - strand, within HP15_1570at 1651.571 kb on + strandat 1651.671 kb on - strandat 1651.739 kb on - strand, within HP15_1571at 1651.786 kb on + strand, within HP15_1571at 1651.794 kb on - strand, within HP15_1571at 1651.794 kb on - strand, within HP15_1571at 1651.823 kb on + strand, within HP15_1571at 1651.876 kb on + strand, within HP15_1571at 1652.016 kb on + strand, within HP15_1571at 1652.106 kb on + strand, within HP15_1571at 1652.129 kb on + strand, within HP15_1571at 1652.152 kb on - strand, within HP15_1571at 1652.152 kb on - strand, within HP15_1571at 1652.327 kb on + strand, within HP15_1571at 1652.460 kb on - strandat 1652.494 kb on + strandat 1652.523 kb on + strandat 1652.665 kb on - strand, within HP15_1572at 1652.665 kb on - strand, within HP15_1572at 1652.675 kb on + strand, within HP15_1572at 1652.675 kb on + strand, within HP15_1572at 1652.713 kb on - strand, within HP15_1572at 1652.808 kb on + strand, within HP15_1572at 1652.809 kb on - strand, within HP15_1572at 1652.844 kb on + strand, within HP15_1572at 1652.996 kb on - strand, within HP15_1572at 1653.121 kb on + strand, within HP15_1572at 1653.121 kb on + strand, within HP15_1572at 1653.231 kb on + strand, within HP15_1572

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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1,650,604 + -1.8
1,650,604 + -1.1
1,650,609 + +0.5
1,650,746 + -1.0
1,650,761 + HP15_1570 0.11 +1.1
1,650,790 - HP15_1570 0.14 -0.5
1,650,848 + HP15_1570 0.21 -3.0
1,650,853 + HP15_1570 0.21 +0.9
1,651,006 + HP15_1570 0.37 -0.6
1,651,116 + HP15_1570 0.49 -0.8
1,651,116 + HP15_1570 0.49 -0.8
1,651,257 - HP15_1570 0.64 +0.7
1,651,384 + HP15_1570 0.78 -1.7
1,651,432 + HP15_1570 0.83 +1.2
1,651,440 - HP15_1570 0.84 +0.1
1,651,571 + +1.1
1,651,671 - +0.1
1,651,739 - HP15_1571 0.17 +0.4
1,651,786 + HP15_1571 0.23 +1.0
1,651,794 - HP15_1571 0.24 +0.7
1,651,794 - HP15_1571 0.24 -1.3
1,651,823 + HP15_1571 0.27 -1.3
1,651,876 + HP15_1571 0.33 +0.7
1,652,016 + HP15_1571 0.50 -0.2
1,652,106 + HP15_1571 0.61 +0.1
1,652,129 + HP15_1571 0.64 -3.8
1,652,152 - HP15_1571 0.66 -1.3
1,652,152 - HP15_1571 0.66 -0.3
1,652,327 + HP15_1571 0.87 -0.8
1,652,460 - -3.9
1,652,494 + -0.6
1,652,523 + -0.9
1,652,665 - HP15_1572 0.20 -2.0
1,652,665 - HP15_1572 0.20 +0.2
1,652,675 + HP15_1572 0.21 +1.2
1,652,675 + HP15_1572 0.21 +0.4
1,652,713 - HP15_1572 0.24 +1.7
1,652,808 + HP15_1572 0.32 +0.3
1,652,809 - HP15_1572 0.32 -1.0
1,652,844 + HP15_1572 0.35 +0.1
1,652,996 - HP15_1572 0.48 +0.9
1,653,121 + HP15_1572 0.59 +0.7
1,653,121 + HP15_1572 0.59 +0.3
1,653,231 + HP15_1572 0.69 +1.7

Or see this region's nucleotide sequence