Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1569 and HP15_1570 are separated by 582 nucleotides HP15_1570 and HP15_1571 are separated by 2 nucleotides HP15_1571 and HP15_1572 overlap by 4 nucleotides
HP15_1569: HP15_1569 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, at 1,649,493 to 1,650,071
_1569
HP15_1570: HP15_1570 - mammalian cell entry related domain protein, at 1,650,654 to 1,651,592
_1570
HP15_1571: HP15_1571 - ATP-binding component of ABC transporter, at 1,651,595 to 1,652,434
_1571
HP15_1572: HP15_1572 - ABC transporter, permease protein, at 1,652,431 to 1,653,597
_1572
Position (kb)
1650
1651
1652 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1650.070 kb on + strand at 1650.073 kb on - strand at 1650.120 kb on - strand at 1650.140 kb on + strand at 1650.192 kb on + strand at 1650.199 kb on - strand at 1650.286 kb on + strand at 1650.359 kb on + strand at 1650.373 kb on + strand at 1650.397 kb on - strand at 1650.422 kb on + strand at 1650.557 kb on - strand at 1650.604 kb on + strand at 1650.604 kb on + strand at 1650.609 kb on + strand at 1650.746 kb on + strand at 1650.761 kb on + strand, within HP15_1570 at 1650.790 kb on - strand, within HP15_1570 at 1650.848 kb on + strand, within HP15_1570 at 1650.853 kb on + strand, within HP15_1570 at 1651.006 kb on + strand, within HP15_1570 at 1651.116 kb on + strand, within HP15_1570 at 1651.116 kb on + strand, within HP15_1570 at 1651.257 kb on - strand, within HP15_1570 at 1651.384 kb on + strand, within HP15_1570 at 1651.432 kb on + strand, within HP15_1570 at 1651.440 kb on - strand, within HP15_1570 at 1651.571 kb on + strand at 1651.671 kb on - strand at 1651.739 kb on - strand, within HP15_1571 at 1651.786 kb on + strand, within HP15_1571 at 1651.794 kb on - strand, within HP15_1571 at 1651.794 kb on - strand, within HP15_1571 at 1651.823 kb on + strand, within HP15_1571 at 1651.876 kb on + strand, within HP15_1571 at 1652.016 kb on + strand, within HP15_1571 at 1652.106 kb on + strand, within HP15_1571 at 1652.129 kb on + strand, within HP15_1571 at 1652.152 kb on - strand, within HP15_1571 at 1652.152 kb on - strand, within HP15_1571 at 1652.327 kb on + strand, within HP15_1571 at 1652.460 kb on - strand at 1652.494 kb on + strand at 1652.523 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 1,650,070 + -0.3 1,650,073 - +0.3 1,650,120 - -0.7 1,650,140 + -0.6 1,650,192 + +0.1 1,650,199 - +0.6 1,650,286 + +1.6 1,650,359 + -1.0 1,650,373 + +1.0 1,650,397 - +0.7 1,650,422 + -2.5 1,650,557 - +0.1 1,650,604 + -1.8 1,650,604 + -1.1 1,650,609 + +0.5 1,650,746 + -1.0 1,650,761 + HP15_1570 0.11 +1.1 1,650,790 - HP15_1570 0.14 -0.5 1,650,848 + HP15_1570 0.21 -3.0 1,650,853 + HP15_1570 0.21 +0.9 1,651,006 + HP15_1570 0.37 -0.6 1,651,116 + HP15_1570 0.49 -0.8 1,651,116 + HP15_1570 0.49 -0.8 1,651,257 - HP15_1570 0.64 +0.7 1,651,384 + HP15_1570 0.78 -1.7 1,651,432 + HP15_1570 0.83 +1.2 1,651,440 - HP15_1570 0.84 +0.1 1,651,571 + +1.1 1,651,671 - +0.1 1,651,739 - HP15_1571 0.17 +0.4 1,651,786 + HP15_1571 0.23 +1.0 1,651,794 - HP15_1571 0.24 +0.7 1,651,794 - HP15_1571 0.24 -1.3 1,651,823 + HP15_1571 0.27 -1.3 1,651,876 + HP15_1571 0.33 +0.7 1,652,016 + HP15_1571 0.50 -0.2 1,652,106 + HP15_1571 0.61 +0.1 1,652,129 + HP15_1571 0.64 -3.8 1,652,152 - HP15_1571 0.66 -1.3 1,652,152 - HP15_1571 0.66 -0.3 1,652,327 + HP15_1571 0.87 -0.8 1,652,460 - -3.9 1,652,494 + -0.6 1,652,523 + -0.9
Or see this region's nucleotide sequence