Strain Fitness in Marinobacter adhaerens HP15 around HP15_1566

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1565 and HP15_1566 are separated by 84 nucleotidesHP15_1566 and HP15_1567 are separated by 99 nucleotidesHP15_1567 and HP15_1568 overlap by 17 nucleotides HP15_1565: HP15_1565 - methyl-accepting chemotaxis sensory transducer, at 1,644,922 to 1,646,541 _1565 HP15_1566: HP15_1566 - conserved hypothetical protein, at 1,646,626 to 1,646,877 _1566 HP15_1567: HP15_1567 - two component transcriptional regulator, LuxR family, at 1,646,977 to 1,647,639 _1567 HP15_1568: HP15_1568 - excinuclease ABC subunit C, at 1,647,623 to 1,649,485 _1568 Position (kb) 1646 1647Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1645.645 kb on + strand, within HP15_1565at 1645.740 kb on + strand, within HP15_1565at 1645.758 kb on + strand, within HP15_1565at 1645.817 kb on - strand, within HP15_1565at 1645.851 kb on + strand, within HP15_1565at 1646.017 kb on - strand, within HP15_1565at 1646.017 kb on - strand, within HP15_1565at 1646.065 kb on + strand, within HP15_1565at 1646.106 kb on - strand, within HP15_1565at 1646.144 kb on - strand, within HP15_1565at 1646.167 kb on - strand, within HP15_1565at 1646.178 kb on - strand, within HP15_1565at 1646.191 kb on + strand, within HP15_1565at 1646.191 kb on + strand, within HP15_1565at 1646.191 kb on + strand, within HP15_1565at 1646.191 kb on + strand, within HP15_1565at 1646.199 kb on - strand, within HP15_1565at 1646.199 kb on - strand, within HP15_1565at 1646.291 kb on - strand, within HP15_1565at 1646.295 kb on + strand, within HP15_1565at 1646.295 kb on + strand, within HP15_1565at 1646.295 kb on + strand, within HP15_1565at 1646.303 kb on - strand, within HP15_1565at 1646.738 kb on + strand, within HP15_1566at 1646.741 kb on - strand, within HP15_1566at 1646.757 kb on + strand, within HP15_1566at 1646.772 kb on + strand, within HP15_1566at 1646.780 kb on - strand, within HP15_1566at 1646.780 kb on - strand, within HP15_1566at 1646.795 kb on - strand, within HP15_1566at 1646.800 kb on - strand, within HP15_1566at 1646.877 kb on + strandat 1646.895 kb on + strandat 1646.982 kb on - strandat 1647.010 kb on - strandat 1647.498 kb on - strand, within HP15_1567at 1647.498 kb on - strand, within HP15_1567at 1647.509 kb on + strand, within HP15_1567

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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1,645,645 + HP15_1565 0.45 +2.1
1,645,740 + HP15_1565 0.50 -0.2
1,645,758 + HP15_1565 0.52 -0.4
1,645,817 - HP15_1565 0.55 +0.7
1,645,851 + HP15_1565 0.57 +0.5
1,646,017 - HP15_1565 0.68 -1.6
1,646,017 - HP15_1565 0.68 +1.3
1,646,065 + HP15_1565 0.71 +0.0
1,646,106 - HP15_1565 0.73 -0.5
1,646,144 - HP15_1565 0.75 -0.7
1,646,167 - HP15_1565 0.77 -0.5
1,646,178 - HP15_1565 0.78 +0.7
1,646,191 + HP15_1565 0.78 -1.3
1,646,191 + HP15_1565 0.78 -0.1
1,646,191 + HP15_1565 0.78 -0.2
1,646,191 + HP15_1565 0.78 +1.0
1,646,199 - HP15_1565 0.79 -0.1
1,646,199 - HP15_1565 0.79 -0.9
1,646,291 - HP15_1565 0.85 -0.6
1,646,295 + HP15_1565 0.85 +0.5
1,646,295 + HP15_1565 0.85 +1.8
1,646,295 + HP15_1565 0.85 +2.8
1,646,303 - HP15_1565 0.85 +1.5
1,646,738 + HP15_1566 0.44 -3.1
1,646,741 - HP15_1566 0.46 -0.8
1,646,757 + HP15_1566 0.52 -0.9
1,646,772 + HP15_1566 0.58 +0.6
1,646,780 - HP15_1566 0.61 -0.1
1,646,780 - HP15_1566 0.61 +0.5
1,646,795 - HP15_1566 0.67 -0.8
1,646,800 - HP15_1566 0.69 -0.1
1,646,877 + +1.4
1,646,895 + -0.5
1,646,982 - +1.4
1,647,010 - +2.0
1,647,498 - HP15_1567 0.79 -0.4
1,647,498 - HP15_1567 0.79 +2.4
1,647,509 + HP15_1567 0.80 +0.5

Or see this region's nucleotide sequence