Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1506 and HP15_tRNA29 overlap by 264 nucleotides HP15_tRNA29 and HP15_1507 are separated by 240 nucleotides HP15_1507 and HP15_1508 are separated by 50 nucleotides
HP15_1506: HP15_1506 - secreted protein containing YkuD domain, at 1,582,110 to 1,583,147
_1506
HP15_tRNA29: HP15_tRNA29 - tRNA-Gly, at 1,582,884 to 1,582,959
_tRNA29
HP15_1507: HP15_1507 - MOSC domain protein beta barrel domain protein, at 1,583,200 to 1,583,889
_1507
HP15_1508: HP15_1508 - ABC transporter ATPase component, at 1,583,940 to 1,585,850
_1508
Position (kb)
1583
1584 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1582.287 kb on + strand, within HP15_1506 at 1582.295 kb on - strand, within HP15_1506 at 1582.473 kb on - strand, within HP15_1506 at 1582.480 kb on + strand, within HP15_1506 at 1582.483 kb on - strand, within HP15_1506 at 1582.483 kb on - strand, within HP15_1506 at 1582.483 kb on - strand, within HP15_1506 at 1582.656 kb on - strand, within HP15_1506 at 1582.725 kb on - strand, within HP15_1506 at 1582.746 kb on - strand, within HP15_1506 at 1583.053 kb on - strand at 1583.149 kb on - strand at 1583.369 kb on + strand, within HP15_1507 at 1583.462 kb on - strand, within HP15_1507 at 1583.462 kb on - strand, within HP15_1507 at 1583.609 kb on - strand, within HP15_1507 at 1583.641 kb on + strand, within HP15_1507 at 1583.671 kb on + strand, within HP15_1507 at 1583.711 kb on + strand, within HP15_1507 at 1583.719 kb on - strand, within HP15_1507 at 1583.779 kb on - strand, within HP15_1507 at 1583.786 kb on + strand, within HP15_1507 at 1583.960 kb on + strand at 1583.968 kb on - strand at 1583.995 kb on - strand at 1584.096 kb on + strand at 1584.288 kb on - strand, within HP15_1508 at 1584.328 kb on - strand, within HP15_1508 at 1584.328 kb on - strand, within HP15_1508 at 1584.361 kb on - strand, within HP15_1508 at 1584.431 kb on + strand, within HP15_1508 at 1584.476 kb on + strand, within HP15_1508 at 1584.558 kb on - strand, within HP15_1508 at 1584.699 kb on - strand, within HP15_1508 at 1584.851 kb on - strand, within HP15_1508
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 1,582,287 + HP15_1506 0.17 +0.9 1,582,295 - HP15_1506 0.18 +0.7 1,582,473 - HP15_1506 0.35 -0.8 1,582,480 + HP15_1506 0.36 +0.2 1,582,483 - HP15_1506 0.36 -0.9 1,582,483 - HP15_1506 0.36 -0.8 1,582,483 - HP15_1506 0.36 -0.3 1,582,656 - HP15_1506 0.53 -2.2 1,582,725 - HP15_1506 0.59 -1.2 1,582,746 - HP15_1506 0.61 -0.1 1,583,053 - +2.1 1,583,149 - +0.2 1,583,369 + HP15_1507 0.24 -0.6 1,583,462 - HP15_1507 0.38 -0.8 1,583,462 - HP15_1507 0.38 +0.7 1,583,609 - HP15_1507 0.59 -0.5 1,583,641 + HP15_1507 0.64 -0.6 1,583,671 + HP15_1507 0.68 -0.5 1,583,711 + HP15_1507 0.74 -0.5 1,583,719 - HP15_1507 0.75 -1.0 1,583,779 - HP15_1507 0.84 +0.0 1,583,786 + HP15_1507 0.85 +1.5 1,583,960 + -0.7 1,583,968 - +2.6 1,583,995 - +1.2 1,584,096 + +0.2 1,584,288 - HP15_1508 0.18 +0.6 1,584,328 - HP15_1508 0.20 +2.0 1,584,328 - HP15_1508 0.20 -0.3 1,584,361 - HP15_1508 0.22 +0.5 1,584,431 + HP15_1508 0.26 -1.7 1,584,476 + HP15_1508 0.28 +0.6 1,584,558 - HP15_1508 0.32 +1.2 1,584,699 - HP15_1508 0.40 -1.5 1,584,851 - HP15_1508 0.48 -0.3
Or see this region's nucleotide sequence