Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_116 and HP15_117 are separated by 302 nucleotides HP15_117 and HP15_118 are separated by 59 nucleotides HP15_118 and HP15_119 are separated by 488 nucleotides
HP15_116: HP15_116 - two-component sensor, at 126,110 to 127,477
_116
HP15_117: HP15_117 - conserved hypothetical protein, secreted, at 127,780 to 128,010
_117
HP15_118: HP15_118 - hypothetical protein, at 128,070 to 128,192
_118
HP15_119: HP15_119 - conserved hypothetical protein, at 128,681 to 129,274
_119
Position (kb)
128
129 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 127.226 kb on + strand, within HP15_116 at 127.286 kb on - strand, within HP15_116 at 127.288 kb on - strand, within HP15_116 at 127.335 kb on + strand, within HP15_116 at 127.428 kb on + strand at 127.428 kb on + strand at 127.428 kb on + strand at 127.432 kb on + strand at 127.467 kb on + strand at 127.468 kb on - strand at 127.475 kb on - strand at 127.476 kb on + strand at 127.489 kb on - strand at 127.552 kb on + strand at 127.552 kb on + strand at 127.552 kb on + strand at 127.552 kb on + strand at 127.560 kb on - strand at 127.560 kb on - strand at 127.564 kb on + strand at 127.574 kb on + strand at 127.577 kb on - strand at 127.577 kb on - strand at 127.619 kb on + strand at 127.619 kb on + strand at 127.654 kb on - strand at 127.711 kb on + strand at 127.870 kb on - strand, within HP15_117 at 127.870 kb on - strand, within HP15_117 at 127.908 kb on - strand, within HP15_117 at 127.932 kb on + strand, within HP15_117 at 127.932 kb on + strand, within HP15_117 at 128.121 kb on - strand, within HP15_118 at 128.332 kb on - strand at 128.583 kb on + strand at 128.591 kb on - strand at 128.591 kb on - strand at 128.591 kb on - strand at 128.591 kb on - strand at 128.595 kb on + strand at 128.610 kb on - strand at 128.687 kb on - strand at 128.705 kb on - strand at 128.721 kb on - strand at 128.786 kb on + strand, within HP15_119 at 128.806 kb on + strand, within HP15_119 at 128.816 kb on + strand, within HP15_119 at 128.816 kb on + strand, within HP15_119 at 128.824 kb on - strand, within HP15_119 at 128.910 kb on + strand, within HP15_119 at 128.931 kb on + strand, within HP15_119 at 128.953 kb on - strand, within HP15_119 at 128.987 kb on - strand, within HP15_119 at 128.987 kb on - strand, within HP15_119 at 129.187 kb on - strand, within HP15_119
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 127,226 + HP15_116 0.82 -0.6 127,286 - HP15_116 0.86 +0.0 127,288 - HP15_116 0.86 -0.7 127,335 + HP15_116 0.90 +0.4 127,428 + -0.6 127,428 + -0.3 127,428 + -1.0 127,432 + +0.6 127,467 + +0.5 127,468 - -0.2 127,475 - -1.5 127,476 + +1.7 127,489 - -0.2 127,552 + -0.7 127,552 + -0.2 127,552 + -0.2 127,552 + -0.5 127,560 - +0.2 127,560 - +0.9 127,564 + -1.0 127,574 + -1.2 127,577 - +0.7 127,577 - -0.1 127,619 + +1.0 127,619 + -0.2 127,654 - -0.0 127,711 + +1.5 127,870 - HP15_117 0.39 -2.0 127,870 - HP15_117 0.39 -0.6 127,908 - HP15_117 0.55 -2.7 127,932 + HP15_117 0.66 -0.4 127,932 + HP15_117 0.66 +0.5 128,121 - HP15_118 0.41 +1.6 128,332 - +1.0 128,583 + +0.1 128,591 - -0.4 128,591 - -3.0 128,591 - +1.6 128,591 - -2.1 128,595 + -0.2 128,610 - -0.1 128,687 - -0.5 128,705 - +0.2 128,721 - +0.6 128,786 + HP15_119 0.18 -0.5 128,806 + HP15_119 0.21 -1.1 128,816 + HP15_119 0.23 +0.2 128,816 + HP15_119 0.23 +0.3 128,824 - HP15_119 0.24 +1.2 128,910 + HP15_119 0.39 +0.1 128,931 + HP15_119 0.42 -0.4 128,953 - HP15_119 0.46 +1.5 128,987 - HP15_119 0.52 -0.0 128,987 - HP15_119 0.52 -0.4 129,187 - HP15_119 0.85 +0.1
Or see this region's nucleotide sequence