Strain Fitness in Marinobacter adhaerens HP15 around HP15_105

Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_104 and HP15_105 are separated by 186 nucleotidesHP15_105 and HP15_106 are separated by 432 nucleotides HP15_104: HP15_104 - integral membrane sensor signal transduction histidine kinase, at 107,608 to 108,921 _104 HP15_105: HP15_105 - conserved hypothetical protein, at 109,108 to 109,308 _105 HP15_106: HP15_106 - conserved hypothetical protein, secreted, at 109,741 to 110,991 _106 Position (kb) 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 108.143 kb on - strand, within HP15_104at 108.164 kb on + strand, within HP15_104at 108.191 kb on + strand, within HP15_104at 108.222 kb on + strand, within HP15_104at 108.316 kb on - strand, within HP15_104at 108.320 kb on + strand, within HP15_104at 108.447 kb on + strand, within HP15_104at 108.673 kb on - strand, within HP15_104at 108.778 kb on - strand, within HP15_104at 108.785 kb on + strand, within HP15_104at 108.839 kb on + strandat 108.916 kb on + strandat 108.925 kb on - strandat 108.985 kb on + strandat 108.993 kb on - strandat 109.328 kb on + strandat 109.328 kb on + strandat 109.351 kb on - strandat 109.374 kb on - strandat 109.412 kb on + strandat 109.420 kb on - strandat 109.496 kb on + strandat 109.515 kb on + strandat 109.607 kb on - strandat 109.607 kb on - strandat 109.635 kb on + strandat 109.648 kb on + strandat 109.756 kb on - strandat 109.778 kb on + strandat 109.792 kb on + strandat 109.814 kb on - strandat 109.816 kb on + strandat 109.851 kb on + strandat 109.976 kb on + strand, within HP15_106at 109.981 kb on + strand, within HP15_106at 109.994 kb on - strand, within HP15_106at 110.014 kb on - strand, within HP15_106at 110.022 kb on - strand, within HP15_106at 110.038 kb on + strand, within HP15_106at 110.038 kb on + strand, within HP15_106at 110.064 kb on - strand, within HP15_106at 110.098 kb on - strand, within HP15_106at 110.098 kb on - strand, within HP15_106at 110.116 kb on + strand, within HP15_106at 110.199 kb on + strand, within HP15_106at 110.202 kb on - strand, within HP15_106at 110.207 kb on - strand, within HP15_106at 110.209 kb on - strand, within HP15_106at 110.209 kb on - strand, within HP15_106at 110.230 kb on + strand, within HP15_106at 110.238 kb on - strand, within HP15_106at 110.238 kb on - strand, within HP15_106at 110.256 kb on - strand, within HP15_106at 110.264 kb on - strand, within HP15_106at 110.276 kb on + strand, within HP15_106

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
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108,143 - HP15_104 0.41 -0.5
108,164 + HP15_104 0.42 -1.5
108,191 + HP15_104 0.44 +1.9
108,222 + HP15_104 0.47 +0.1
108,316 - HP15_104 0.54 -0.1
108,320 + HP15_104 0.54 +1.2
108,447 + HP15_104 0.64 +1.1
108,673 - HP15_104 0.81 +0.8
108,778 - HP15_104 0.89 +1.3
108,785 + HP15_104 0.90 +0.9
108,839 + +0.7
108,916 + +0.8
108,925 - +0.1
108,985 + -1.6
108,993 - +1.2
109,328 + +1.7
109,328 + +0.7
109,351 - +0.2
109,374 - -1.1
109,412 + -0.8
109,420 - -2.0
109,496 + +0.9
109,515 + +1.0
109,607 - -1.2
109,607 - -0.9
109,635 + -0.1
109,648 + -1.2
109,756 - -0.5
109,778 + +1.4
109,792 + -0.5
109,814 - -1.5
109,816 + -0.2
109,851 + +1.1
109,976 + HP15_106 0.19 -0.2
109,981 + HP15_106 0.19 -1.1
109,994 - HP15_106 0.20 -0.1
110,014 - HP15_106 0.22 -3.6
110,022 - HP15_106 0.22 +0.5
110,038 + HP15_106 0.24 -1.1
110,038 + HP15_106 0.24 +0.3
110,064 - HP15_106 0.26 +0.8
110,098 - HP15_106 0.29 -0.7
110,098 - HP15_106 0.29 +2.9
110,116 + HP15_106 0.30 -1.1
110,199 + HP15_106 0.37 -1.0
110,202 - HP15_106 0.37 -1.1
110,207 - HP15_106 0.37 -1.3
110,209 - HP15_106 0.37 -0.7
110,209 - HP15_106 0.37 -0.9
110,230 + HP15_106 0.39 -1.1
110,238 - HP15_106 0.40 -0.3
110,238 - HP15_106 0.40 -0.5
110,256 - HP15_106 0.41 +0.3
110,264 - HP15_106 0.42 +1.2
110,276 + HP15_106 0.43 -1.2

Or see this region's nucleotide sequence