Experiment: Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_104 and HP15_105 are separated by 186 nucleotides HP15_105 and HP15_106 are separated by 432 nucleotides
HP15_104: HP15_104 - integral membrane sensor signal transduction histidine kinase, at 107,608 to 108,921
_104
HP15_105: HP15_105 - conserved hypothetical protein, at 109,108 to 109,308
_105
HP15_106: HP15_106 - conserved hypothetical protein, secreted, at 109,741 to 110,991
_106
Position (kb)
109
110 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 108.143 kb on - strand, within HP15_104 at 108.164 kb on + strand, within HP15_104 at 108.191 kb on + strand, within HP15_104 at 108.222 kb on + strand, within HP15_104 at 108.316 kb on - strand, within HP15_104 at 108.320 kb on + strand, within HP15_104 at 108.447 kb on + strand, within HP15_104 at 108.673 kb on - strand, within HP15_104 at 108.778 kb on - strand, within HP15_104 at 108.785 kb on + strand, within HP15_104 at 108.839 kb on + strand at 108.916 kb on + strand at 108.925 kb on - strand at 108.985 kb on + strand at 108.993 kb on - strand at 109.328 kb on + strand at 109.328 kb on + strand at 109.351 kb on - strand at 109.374 kb on - strand at 109.412 kb on + strand at 109.420 kb on - strand at 109.496 kb on + strand at 109.515 kb on + strand at 109.607 kb on - strand at 109.607 kb on - strand at 109.635 kb on + strand at 109.648 kb on + strand at 109.756 kb on - strand at 109.778 kb on + strand at 109.792 kb on + strand at 109.814 kb on - strand at 109.816 kb on + strand at 109.851 kb on + strand at 109.976 kb on + strand, within HP15_106 at 109.981 kb on + strand, within HP15_106 at 109.994 kb on - strand, within HP15_106 at 110.014 kb on - strand, within HP15_106 at 110.022 kb on - strand, within HP15_106 at 110.038 kb on + strand, within HP15_106 at 110.038 kb on + strand, within HP15_106 at 110.064 kb on - strand, within HP15_106 at 110.098 kb on - strand, within HP15_106 at 110.098 kb on - strand, within HP15_106 at 110.116 kb on + strand, within HP15_106 at 110.199 kb on + strand, within HP15_106 at 110.202 kb on - strand, within HP15_106 at 110.207 kb on - strand, within HP15_106 at 110.209 kb on - strand, within HP15_106 at 110.209 kb on - strand, within HP15_106 at 110.230 kb on + strand, within HP15_106 at 110.238 kb on - strand, within HP15_106 at 110.238 kb on - strand, within HP15_106 at 110.256 kb on - strand, within HP15_106 at 110.264 kb on - strand, within HP15_106 at 110.276 kb on + strand, within HP15_106
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Synechococcus str. WH7803 10:1 starting OD to HP15 remove 108,143 - HP15_104 0.41 -0.5 108,164 + HP15_104 0.42 -1.5 108,191 + HP15_104 0.44 +1.9 108,222 + HP15_104 0.47 +0.1 108,316 - HP15_104 0.54 -0.1 108,320 + HP15_104 0.54 +1.2 108,447 + HP15_104 0.64 +1.1 108,673 - HP15_104 0.81 +0.8 108,778 - HP15_104 0.89 +1.3 108,785 + HP15_104 0.90 +0.9 108,839 + +0.7 108,916 + +0.8 108,925 - +0.1 108,985 + -1.6 108,993 - +1.2 109,328 + +1.7 109,328 + +0.7 109,351 - +0.2 109,374 - -1.1 109,412 + -0.8 109,420 - -2.0 109,496 + +0.9 109,515 + +1.0 109,607 - -1.2 109,607 - -0.9 109,635 + -0.1 109,648 + -1.2 109,756 - -0.5 109,778 + +1.4 109,792 + -0.5 109,814 - -1.5 109,816 + -0.2 109,851 + +1.1 109,976 + HP15_106 0.19 -0.2 109,981 + HP15_106 0.19 -1.1 109,994 - HP15_106 0.20 -0.1 110,014 - HP15_106 0.22 -3.6 110,022 - HP15_106 0.22 +0.5 110,038 + HP15_106 0.24 -1.1 110,038 + HP15_106 0.24 +0.3 110,064 - HP15_106 0.26 +0.8 110,098 - HP15_106 0.29 -0.7 110,098 - HP15_106 0.29 +2.9 110,116 + HP15_106 0.30 -1.1 110,199 + HP15_106 0.37 -1.0 110,202 - HP15_106 0.37 -1.1 110,207 - HP15_106 0.37 -1.3 110,209 - HP15_106 0.37 -0.7 110,209 - HP15_106 0.37 -0.9 110,230 + HP15_106 0.39 -1.1 110,238 - HP15_106 0.40 -0.3 110,238 - HP15_106 0.40 -0.5 110,256 - HP15_106 0.41 +0.3 110,264 - HP15_106 0.42 +1.2 110,276 + HP15_106 0.43 -1.2
Or see this region's nucleotide sequence