Strain Fitness in Shewanella oneidensis MR-1 around SO1029

Experiment: LB, aerobic, 1G configuration

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB, aerobic, 1G configuration
1,065,043	+				+1.0
1,065,043	+				+2.5
1,065,047	+				-0.3
1,065,077	+				-1.1
1,065,084	+				+1.0
1,065,092	-				+0.6
1,065,104	+				+0.0
1,065,107	-				-1.1
1,065,131	+				+0.1
1,065,140	-				+0.0
1,065,140	-				+1.0
1,065,140	-				+1.4
1,065,167	+				-0.3
1,065,182	+				+0.0
1,065,182	+				-0.2
1,065,182	+				-0.2
1,065,190	-		SO1027	0.12	+0.4
1,065,191	+		SO1027	0.12	+0.4
1,065,191	+		SO1027	0.12	+0.1
1,065,192	-		SO1027	0.12	-0.5
1,065,198	+		SO1027	0.14	-0.8
1,065,199	-		SO1027	0.14	-1.4
1,065,210	-		SO1027	0.18	+0.4
1,065,226	+		SO1027	0.22	-1.3
1,065,226	+		SO1027	0.22	-0.3
1,065,236	+		SO1027	0.25	+1.0
1,065,240	-		SO1027	0.26	+0.2
1,065,243	-		SO1027	0.27	+0.5
1,065,251	-		SO1027	0.30	+0.6
1,065,281	-		SO1027	0.38	+1.0
1,065,282	+		SO1027	0.39	+0.2
1,065,282	+		SO1027	0.39	+0.3
1,065,290	-		SO1027	0.41	-0.4
1,065,291	-		SO1027	0.41	+0.0
1,065,301	-		SO1027	0.44	-0.6
1,065,337	+		SO1027	0.54	+1.0
1,065,337	+		SO1027	0.54	+1.6
1,065,345	-		SO1027	0.57	+2.6
1,065,345	-		SO1027	0.57	-0.5
1,065,345	-		SO1027	0.57	+0.3
1,065,345	-		SO1027	0.57	+1.4
1,065,345	-		SO1027	0.57	+0.3
1,065,379	-		SO1027	0.67	+1.0
1,065,386	+		SO1027	0.69	-0.4
1,065,389	-		SO1027	0.70	+0.2
1,065,389	-		SO1027	0.70	-0.3
1,065,406	+		SO1027	0.74	+0.5
1,065,413	+		SO1027	0.77	+0.4
1,065,415	+		SO1027	0.77	-1.2
1,065,415	+		SO1027	0.77	+0.5
1,065,415	+		SO1027	0.77	+0.8
1,065,415	+		SO1027	0.77	-0.5
1,065,421	-		SO1027	0.79	-0.1
1,065,423	-		SO1027	0.79	-0.2
1,065,423	-		SO1027	0.79	+1.0
1,065,423	-		SO1027	0.79	-0.8
1,065,423	-		SO1027	0.79	-0.4
1,065,423	-		SO1027	0.79	+0.2
1,065,423	-		SO1027	0.79	+0.6
1,065,473	+				-1.0
1,065,473	+				+0.8
1,065,492	+				+0.6
1,065,494	+				+0.0
1,065,496	-				-0.8
1,065,519	-				+0.2
1,065,525	-				+0.2
1,065,527	+				-0.5
1,065,527	+				+0.9
1,065,529	+				+1.0
1,065,529	+				-0.5
1,065,529	+				-0.1
1,065,529	+				-0.4
1,065,529	+				+0.2
1,065,529	+				-0.7
1,065,535	-				+0.7
1,065,535	-				-0.8
1,065,537	-				+0.6
1,065,537	-				+0.1
1,065,537	-				-1.1
1,065,537	-				-0.3
1,065,537	-				+1.0
1,065,537	-				+0.2
1,065,537	-				+0.2
1,065,537	-				+0.0
1,065,544	+				-0.2
1,065,551	-				+0.3
1,065,634	-				-0.4
1,065,647	-				+0.4
1,065,649	-				+0.9
1,065,677	+				+0.2
1,065,681	+				-0.9
1,065,681	+				-0.4
1,065,681	+				+0.2
1,065,682	+				+1.0
1,065,682	+				+0.5
1,065,682	+				-0.3
1,065,682	+				-0.7
1,065,682	+				+0.1
1,065,682	+				+0.2
1,065,682	+				+0.2
1,065,682	+				-0.2
1,065,685	-		SO1028	0.10	+1.0
1,065,686	+		SO1028	0.11	+1.0
1,065,686	+		SO1028	0.11	+0.5
1,065,686	+		SO1028	0.11	+0.1
1,065,686	+		SO1028	0.11	+0.2
1,065,687	+		SO1028	0.11	-0.2
1,065,689	-		SO1028	0.12	-0.1
1,065,690	-		SO1028	0.13	-0.2
1,065,690	-		SO1028	0.13	+1.0
1,065,690	-		SO1028	0.13	+0.5
1,065,690	-		SO1028	0.13	-0.1
1,065,691	+		SO1028	0.13	+1.0
1,065,691	+		SO1028	0.13	+0.8
1,065,691	+		SO1028	0.13	-0.2
1,065,694	-		SO1028	0.15	+2.0
1,065,694	-		SO1028	0.15	+2.0
1,065,694	-		SO1028	0.15	-0.2
1,065,694	-		SO1028	0.15	-1.0
1,065,694	-		SO1028	0.15	+0.4
1,065,699	+		SO1028	0.17	+0.2
1,065,699	+		SO1028	0.17	-0.1
1,065,699	+		SO1028	0.17	-0.6
1,065,699	-		SO1028	0.17	+1.0
1,065,704	-		SO1028	0.19	+0.2
1,065,707	-		SO1028	0.21	-0.1
1,065,707	-		SO1028	0.21	-0.1
1,065,707	-		SO1028	0.21	-0.2
1,065,711	-		SO1028	0.23	+0.8
1,065,712	-		SO1028	0.23	+0.6
1,065,712	-		SO1028	0.23	+0.5
1,065,716	+		SO1028	0.25	-0.3
1,065,716	+		SO1028	0.25	-1.5
1,065,719	-		SO1028	0.26	-0.0
1,065,767	+		SO1028	0.49	+1.3
1,065,789	+		SO1028	0.59	+0.6
1,065,789	+		SO1028	0.59	-0.2
1,065,795	+		SO1028	0.62	-0.1
1,065,797	-		SO1028	0.63	+0.8
1,065,797	-		SO1028	0.63	-0.0
1,065,797	-		SO1028	0.63	+0.8
1,065,797	-		SO1028	0.63	-0.5
1,065,797	-		SO1028	0.63	+0.2
1,065,798	-		SO1028	0.63	-0.5
1,065,822	+		SO1028	0.75	-0.8
1,065,825	-		SO1028	0.76	-0.2
1,065,825	-		SO1028	0.76	+1.0
1,065,828	+		SO1028	0.77	-0.1
1,065,829	+		SO1028	0.78	+0.6
1,065,833	-		SO1028	0.80	+1.0
1,065,843	-		SO1028	0.85	+0.3
1,065,850	+		SO1028	0.88	+0.0
1,065,869	+				+1.0
1,065,878	+				-0.2
1,065,878	+				-0.7
1,065,886	-				-0.3
1,065,887	-				-0.4
1,065,887	-				-0.8
1,065,902	-				-0.3
1,065,912	-				-0.5
1,065,940	-				+0.0
1,065,943	+				-1.2
1,065,951	-				-2.1
1,065,952	-				-0.6
1,065,952	-				-1.0
1,065,953	+				-1.7
1,065,953	+				-1.1
1,065,953	+				-0.5
1,065,955	-		SO1029	0.10	+0.9
1,065,957	+		SO1029	0.11	-0.2
1,065,961	-		SO1029	0.12	-1.0
1,065,961	-		SO1029	0.12	+0.2
1,065,962	+		SO1029	0.12	+0.8
1,065,966	-		SO1029	0.13	+0.2
1,065,967	+		SO1029	0.13	-0.2
1,065,971	-		SO1029	0.14	+0.6
1,065,976	-		SO1029	0.15	+0.5
1,065,983	+		SO1029	0.17	+1.0
1,065,993	+		SO1029	0.19	+0.4
1,065,998	-		SO1029	0.21	-0.4
1,066,003	-		SO1029	0.22	-0.5
1,066,006	-		SO1029	0.22	+2.6
1,066,045	+		SO1029	0.32	+0.6
1,066,072	-		SO1029	0.38	-0.2
1,066,106	+		SO1029	0.46	-0.2
1,066,106	+		SO1029	0.46	-0.4
1,066,106	+		SO1029	0.46	-1.2
1,066,106	+		SO1029	0.46	+0.6
1,066,133	+		SO1029	0.52	-0.2
1,066,134	+		SO1029	0.53	-0.7
1,066,134	+		SO1029	0.53	-0.8
1,066,134	+		SO1029	0.53	-0.8
1,066,142	-		SO1029	0.55	+0.3
1,066,142	-		SO1029	0.55	+0.1
1,066,142	-		SO1029	0.55	+0.7
1,066,142	-		SO1029	0.55	+1.0
1,066,142	-		SO1029	0.55	+0.0
1,066,143	+		SO1029	0.55	+0.0
1,066,143	+		SO1029	0.55	+0.2
1,066,143	+		SO1029	0.55	+0.5
1,066,143	+		SO1029	0.55	-1.0
1,066,144	-		SO1029	0.55	+0.8
1,066,151	-		SO1029	0.57	-0.1
1,066,151	-		SO1029	0.57	+1.0
1,066,151	-		SO1029	0.57	-0.3
1,066,153	+		SO1029	0.57	-1.0
1,066,153	+		SO1029	0.57	-0.1
1,066,153	+		SO1029	0.57	+0.0
1,066,153	+		SO1029	0.57	+0.5
1,066,153	+		SO1029	0.57	+0.8
1,066,153	+		SO1029	0.57	+0.0
1,066,153	+		SO1029	0.57	-0.1
1,066,153	-		SO1029	0.57	-0.2
1,066,156	-		SO1029	0.58	-0.3
1,066,156	-		SO1029	0.58	-0.5
1,066,159	+		SO1029	0.59	+0.0
1,066,159	+		SO1029	0.59	+0.7
1,066,159	+		SO1029	0.59	+0.2
1,066,161	+		SO1029	0.59	+0.0
1,066,161	-		SO1029	0.59	-0.8
1,066,161	-		SO1029	0.59	+0.0
1,066,167	-		SO1029	0.61	+0.8
1,066,167	-		SO1029	0.61	+0.9
1,066,167	-		SO1029	0.61	+0.6
1,066,167	-		SO1029	0.61	-0.1
1,066,167	-		SO1029	0.61	+1.0
1,066,167	-		SO1029	0.61	+1.8
1,066,178	-		SO1029	0.63	-0.5
1,066,178	-		SO1029	0.63	-0.5
1,066,184	-		SO1029	0.65	-0.4
1,066,195	+		SO1029	0.67	-0.6
1,066,195	+		SO1029	0.67	-0.1
1,066,195	+		SO1029	0.67	+0.9
1,066,195	+		SO1029	0.67	+0.1
1,066,195	+		SO1029	0.67	+0.6
1,066,195	+		SO1029	0.67	-0.1
1,066,203	-		SO1029	0.69	+0.2
1,066,203	-		SO1029	0.69	+0.0
1,066,203	-		SO1029	0.69	+0.4
1,066,203	-		SO1029	0.69	+0.1
1,066,203	-		SO1029	0.69	-0.5
1,066,203	-		SO1029	0.69	+0.5
1,066,203	-		SO1029	0.69	-0.9
1,066,203	-		SO1029	0.69	+1.0
1,066,204	+		SO1029	0.69	+1.2
1,066,214	+		SO1029	0.72	+0.7
1,066,220	-		SO1029	0.73	+1.6
1,066,240	-		SO1029	0.78	+0.5
1,066,288	+		SO1029	0.89	-0.2
1,066,291	-				+0.6
1,066,291	-				+0.1
1,066,297	-				+0.0
1,066,302	-				-1.0
1,066,349	+				+0.2
1,066,349	-				+0.1
1,066,352	-				+0.2
1,066,360	-				+0.9
1,066,375	+				-0.4
1,066,376	+				-0.8
1,066,381	+				-0.5
1,066,381	+				+0.5
1,066,382	+				+0.2
1,066,384	-				-0.5
1,066,389	-				+0.8
1,066,389	-				+0.0
1,066,389	-				-0.4
1,066,395	+				+0.1
1,066,396	+				-0.1
1,066,403	+				+0.2
1,066,403	+				+0.1
1,066,404	-				-0.5
1,066,406	-				-0.4
1,066,416	+				-0.8
1,066,418	-				+0.8
1,066,427	-				-0.3
1,066,429	+				-0.7
1,066,429	+				-0.2
1,066,429	+				-0.5
1,066,432	-				-0.4
1,066,434	+				+0.1
1,066,437	-				-0.2
1,066,438	-				-0.7
1,066,439	+				-1.0
1,066,441	+				-0.0
1,066,449	+				-0.3
1,066,497	+				-0.1
1,066,497	+				-0.1
1,066,497	+				+0.3
1,066,497	+				+0.3
1,066,497	+				+0.1
1,066,497	+				+1.0
1,066,497	+				+0.2
1,066,497	+				+0.6
1,066,499	-				-0.5
1,066,504	+				+0.7
1,066,505	-				+0.2
1,066,505	-				+0.6
1,066,505	-				+0.1
1,066,505	-				+1.5
1,066,505	-				+0.4
1,066,505	-				-1.1
1,066,505	-				+0.3
1,066,505	-				+2.0
1,066,505	-				+0.7
1,066,511	+				-1.8
1,066,511	+				-0.0
1,066,512	-				+0.0
1,066,512	-				+0.6
1,066,514	-				-0.3
1,066,519	-				-0.2
1,066,524	-				-0.2
1,066,524	-				+0.2
1,066,532	-				-0.3
1,066,532	-				-0.1
1,066,539	-				+1.6
1,066,559	+				-0.0
1,066,560	+				-0.0
1,066,560	+				+0.2
1,066,582	+				+0.7
1,066,590	-				-0.3
1,066,591	+				+0.1
1,066,593	-				-0.4
1,066,599	+				+0.8
1,066,599	+				-0.2
1,066,599	-				+0.5
1,066,599	-				+0.2
1,066,599	-				-0.5
1,066,599	-				-0.2
1,066,599	-				-0.7
1,066,634	+				+0.0
1,066,696	+				+1.0
1,066,704	-				+0.6
1,066,704	-				-0.6
1,066,704	-				+0.2
1,066,824	-				+0.2
1,066,833	-				+0.4
1,066,836	+				+0.2
1,066,872	-				+1.2
1,066,876	+				+0.7
1,066,901	+				+0.3
1,066,913	+				+3.0
1,066,913	+				-0.2
1,066,913	+				+0.0
1,066,913	+				-0.4
1,066,921	-				+0.3
1,067,025	-				+0.2
1,067,025	-				+1.0
1,067,068	+				-1.2
1,067,080	-				+0.2
1,067,157	+				-0.3
1,067,193	+	metH	SO1030	0.10	+0.1
1,067,233	+	metH	SO1030	0.12	+0.1
1,067,301	-	metH	SO1030	0.13	+1.0