Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04260 and RALBFv3_RS04265 are separated by 70 nucleotides RALBFv3_RS04265 and RALBFv3_RS04270 are separated by 194 nucleotides RALBFv3_RS04270 and RALBFv3_RS04275 overlap by 1 nucleotides RALBFv3_RS04275 and RALBFv3_RS04280 are separated by 109 nucleotides
RALBFv3_RS04260: RALBFv3_RS04260 - LysR family transcriptional regulator, at 950,994 to 951,878
_RS04260
RALBFv3_RS04265: RALBFv3_RS04265 - DUF4439 domain-containing protein, at 951,949 to 952,566
_RS04265
RALBFv3_RS04270: RALBFv3_RS04270 - DNA-directed RNA polymerase sigma-70 factor, at 952,761 to 953,408
_RS04270
RALBFv3_RS04275: RALBFv3_RS04275 - membrane protein, at 953,408 to 954,127
_RS04275
RALBFv3_RS04280: RALBFv3_RS04280 - argininosuccinate lyase, at 954,237 to 955,652
_RS04280
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1 at 952.064 kb on + strand, within RALBFv3_RS04265 at 952.089 kb on - strand, within RALBFv3_RS04265 at 952.089 kb on - strand, within RALBFv3_RS04265 at 952.089 kb on - strand, within RALBFv3_RS04265 at 952.172 kb on + strand, within RALBFv3_RS04265 at 952.199 kb on + strand, within RALBFv3_RS04265 at 952.286 kb on - strand, within RALBFv3_RS04265 at 952.325 kb on + strand, within RALBFv3_RS04265 at 952.326 kb on - strand, within RALBFv3_RS04265 at 952.546 kb on + strand at 952.547 kb on - strand at 952.561 kb on - strand at 952.728 kb on - strand at 952.728 kb on - strand at 952.728 kb on - strand at 952.728 kb on - strand at 952.920 kb on + strand, within RALBFv3_RS04270 at 952.920 kb on + strand, within RALBFv3_RS04270 at 952.921 kb on - strand, within RALBFv3_RS04270 at 952.962 kb on - strand, within RALBFv3_RS04270 at 952.962 kb on - strand, within RALBFv3_RS04270 at 953.038 kb on - strand, within RALBFv3_RS04270 at 953.457 kb on - strand at 954.170 kb on + strand at 954.171 kb on - strand at 954.171 kb on - strand at 954.171 kb on - strand at 954.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 952,064 + RALBFv3_RS04265 0.19 +0.3 952,089 - RALBFv3_RS04265 0.23 -2.0 952,089 - RALBFv3_RS04265 0.23 -0.4 952,089 - RALBFv3_RS04265 0.23 -1.0 952,172 + RALBFv3_RS04265 0.36 -1.8 952,199 + RALBFv3_RS04265 0.40 +0.2 952,286 - RALBFv3_RS04265 0.55 +0.3 952,325 + RALBFv3_RS04265 0.61 +0.3 952,326 - RALBFv3_RS04265 0.61 -0.3 952,546 + +0.3 952,547 - -1.0 952,561 - +0.3 952,728 - -0.3 952,728 - -0.2 952,728 - +1.3 952,728 - +1.3 952,920 + RALBFv3_RS04270 0.25 +0.3 952,920 + RALBFv3_RS04270 0.25 +0.6 952,921 - RALBFv3_RS04270 0.25 +0.1 952,962 - RALBFv3_RS04270 0.31 -1.2 952,962 - RALBFv3_RS04270 0.31 +1.3 953,038 - RALBFv3_RS04270 0.43 -1.0 953,457 - -1.7 954,170 + -0.2 954,171 - -0.1 954,171 - +1.3 954,171 - -2.6 954,171 - +1.3
Or see this region's nucleotide sequence