Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02195

Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02190 and RALBFv3_RS02195 are separated by 16 nucleotidesRALBFv3_RS02195 and RALBFv3_RS02200 are separated by 22 nucleotides RALBFv3_RS02190: RALBFv3_RS02190 - carbamoyl-phosphate synthase large subunit, at 487,719 to 490,964 _RS02190 RALBFv3_RS02195: RALBFv3_RS02195 - leucine efflux protein LeuE, at 490,981 to 491,658 _RS02195 RALBFv3_RS02200: RALBFv3_RS02200 - carbamoyl-phosphate synthase small subunit, at 491,681 to 492,817 _RS02200 Position (kb) 490 491 492Strain fitness (log2 ratio) -1 0 1at 491.418 kb on - strand, within RALBFv3_RS02195at 491.559 kb on - strand, within RALBFv3_RS02195

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
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491,418 - RALBFv3_RS02195 0.64 -1.2
491,559 - RALBFv3_RS02195 0.85 +0.8

Or see this region's nucleotide sequence