Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22845 and BWI76_RS22850 are separated by 2 nucleotides BWI76_RS22850 and BWI76_RS22855 overlap by 1 nucleotides BWI76_RS22855 and BWI76_RS22860 are separated by 633 nucleotides
BWI76_RS22845: BWI76_RS22845 - flavodoxin, at 4,767,099 to 4,767,542
_RS22845
BWI76_RS22850: BWI76_RS22850 - tRNA pseudouridine synthase TruC, at 4,767,545 to 4,768,339
_RS22850
BWI76_RS22855: BWI76_RS22855 - hypothetical protein, at 4,768,339 to 4,768,668
_RS22855
BWI76_RS22860: BWI76_RS22860 - SecY-interacting protein, at 4,769,302 to 4,769,847
_RS22860
Position (kb) 4768
4769 Strain fitness (log2 ratio) -1
0
1 at 4767.408 kb on + strand, within BWI76_RS22845 at 4767.889 kb on + strand, within BWI76_RS22850 at 4768.137 kb on + strand, within BWI76_RS22850 at 4768.291 kb on - strand at 4768.370 kb on + strand at 4768.428 kb on + strand, within BWI76_RS22855 at 4768.530 kb on + strand, within BWI76_RS22855 at 4768.538 kb on - strand, within BWI76_RS22855 at 4768.610 kb on - strand, within BWI76_RS22855 at 4768.748 kb on - strand at 4768.748 kb on - strand at 4768.803 kb on - strand at 4768.859 kb on - strand at 4768.902 kb on - strand at 4768.904 kb on + strand at 4768.985 kb on - strand at 4769.116 kb on + strand at 4769.378 kb on - strand, within BWI76_RS22860
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 4,767,408 + BWI76_RS22845 0.70 +0.3 4,767,889 + BWI76_RS22850 0.43 -0.3 4,768,137 + BWI76_RS22850 0.74 -0.2 4,768,291 - +0.3 4,768,370 + +0.1 4,768,428 + BWI76_RS22855 0.27 +1.7 4,768,530 + BWI76_RS22855 0.58 +0.7 4,768,538 - BWI76_RS22855 0.60 +0.2 4,768,610 - BWI76_RS22855 0.82 -0.6 4,768,748 - +0.7 4,768,748 - +1.2 4,768,803 - +0.5 4,768,859 - +1.3 4,768,902 - +0.4 4,768,904 + +0.2 4,768,985 - +0.6 4,769,116 + +0.0 4,769,378 - BWI76_RS22860 0.14 +0.1
Or see this region's nucleotide sequence