Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16830 and BWI76_RS16835 are separated by 424 nucleotides BWI76_RS16835 and BWI76_RS16840 are separated by 195 nucleotides BWI76_RS16840 and BWI76_RS16845 overlap by 7 nucleotides
BWI76_RS16830: BWI76_RS16830 - ABC transporter, at 3,488,979 to 3,489,800
_RS16830
BWI76_RS16835: BWI76_RS16835 - TonB-dependent siderophore receptor, at 3,490,225 to 3,492,378
_RS16835
BWI76_RS16840: BWI76_RS16840 - ABC transporter, at 3,492,574 to 3,493,362
_RS16840
BWI76_RS16845: BWI76_RS16845 - ABC transporter permease, at 3,493,356 to 3,494,351
_RS16845
Position (kb)
3490
3491
3492
3493 Strain fitness (log2 ratio)
-1
0
1
2 at 3489.236 kb on + strand, within BWI76_RS16830 at 3489.349 kb on + strand, within BWI76_RS16830 at 3489.441 kb on + strand, within BWI76_RS16830 at 3489.450 kb on + strand, within BWI76_RS16830 at 3489.461 kb on + strand, within BWI76_RS16830 at 3490.065 kb on + strand at 3490.120 kb on + strand at 3490.384 kb on - strand at 3490.669 kb on - strand, within BWI76_RS16835 at 3490.956 kb on - strand, within BWI76_RS16835 at 3491.319 kb on - strand, within BWI76_RS16835 at 3491.376 kb on + strand, within BWI76_RS16835 at 3491.436 kb on + strand, within BWI76_RS16835 at 3491.448 kb on + strand, within BWI76_RS16835 at 3491.591 kb on + strand, within BWI76_RS16835 at 3491.597 kb on - strand, within BWI76_RS16835 at 3491.789 kb on + strand, within BWI76_RS16835 at 3491.808 kb on + strand, within BWI76_RS16835 at 3491.847 kb on + strand, within BWI76_RS16835 at 3491.871 kb on + strand, within BWI76_RS16835 at 3492.086 kb on + strand, within BWI76_RS16835 at 3492.127 kb on - strand, within BWI76_RS16835 at 3492.297 kb on - strand at 3492.470 kb on + strand at 3492.531 kb on + strand at 3492.735 kb on - strand, within BWI76_RS16840 at 3492.765 kb on + strand, within BWI76_RS16840 at 3493.165 kb on - strand, within BWI76_RS16840
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 3,489,236 + BWI76_RS16830 0.31 -0.1 3,489,349 + BWI76_RS16830 0.45 +0.6 3,489,441 + BWI76_RS16830 0.56 -0.1 3,489,450 + BWI76_RS16830 0.57 +0.0 3,489,461 + BWI76_RS16830 0.59 -0.0 3,490,065 + +1.9 3,490,120 + +0.1 3,490,384 - -0.9 3,490,669 - BWI76_RS16835 0.21 +0.2 3,490,956 - BWI76_RS16835 0.34 +0.9 3,491,319 - BWI76_RS16835 0.51 -0.6 3,491,376 + BWI76_RS16835 0.53 -0.0 3,491,436 + BWI76_RS16835 0.56 +0.5 3,491,448 + BWI76_RS16835 0.57 +0.9 3,491,591 + BWI76_RS16835 0.63 +1.5 3,491,597 - BWI76_RS16835 0.64 +0.1 3,491,789 + BWI76_RS16835 0.73 +0.2 3,491,808 + BWI76_RS16835 0.73 -0.4 3,491,847 + BWI76_RS16835 0.75 +0.7 3,491,871 + BWI76_RS16835 0.76 -0.2 3,492,086 + BWI76_RS16835 0.86 +0.0 3,492,127 - BWI76_RS16835 0.88 -0.5 3,492,297 - -1.2 3,492,470 + +0.4 3,492,531 + -0.3 3,492,735 - BWI76_RS16840 0.20 +0.7 3,492,765 + BWI76_RS16840 0.24 -0.3 3,493,165 - BWI76_RS16840 0.75 -0.1
Or see this region's nucleotide sequence