Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16135 and BWI76_RS16140 are separated by 10 nucleotides BWI76_RS16140 and BWI76_RS16145 are separated by 10 nucleotides BWI76_RS16145 and BWI76_RS16150 are separated by 167 nucleotides
BWI76_RS16135: BWI76_RS16135 - acetyl-CoA acetyltransferase, at 3,347,750 to 3,348,952
_RS16135
BWI76_RS16140: BWI76_RS16140 - 3-oxoadipate CoA-transferase, at 3,348,963 to 3,349,619
_RS16140
BWI76_RS16145: BWI76_RS16145 - 3-oxoadipate CoA-transferase, at 3,349,630 to 3,350,316
_RS16145
BWI76_RS16150: BWI76_RS16150 - IclR family transcriptional regulator, at 3,350,484 to 3,351,290
_RS16150
Position (kb) 3348
3349
3350 Strain fitness (log2 ratio) -1
0
1
2 at 3348.604 kb on - strand, within BWI76_RS16135 at 3349.004 kb on + strand at 3349.401 kb on - strand, within BWI76_RS16140 at 3349.411 kb on + strand, within BWI76_RS16140 at 3350.569 kb on + strand, within BWI76_RS16150 at 3350.577 kb on - strand, within BWI76_RS16150
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 3,348,604 - BWI76_RS16135 0.71 +2.3 3,349,004 + +1.7 3,349,401 - BWI76_RS16140 0.67 +1.0 3,349,411 + BWI76_RS16140 0.68 +0.2 3,350,569 + BWI76_RS16150 0.11 -0.1 3,350,577 - BWI76_RS16150 0.12 -0.3
Or see this region's nucleotide sequence