Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13625 and BWI76_RS13630 are separated by 214 nucleotides BWI76_RS13630 and BWI76_RS13635 overlap by 4 nucleotides BWI76_RS13635 and BWI76_RS13640 are separated by 278 nucleotides
BWI76_RS13625: BWI76_RS13625 - hypothetical protein, at 2,840,009 to 2,840,590
_RS13625
BWI76_RS13630: BWI76_RS13630 - ABC transporter, at 2,840,805 to 2,841,506
_RS13630
BWI76_RS13635: BWI76_RS13635 - extracellular solute-binding protein, at 2,841,503 to 2,842,471
_RS13635
BWI76_RS13640: BWI76_RS13640 - binding-protein-dependent transport system inner membrane protein, at 2,842,750 to 2,844,405
_RS13640
Position (kb)
2841
2842
2843 Strain fitness (log2 ratio)
-1
0
1 at 2840.546 kb on - strand at 2840.672 kb on + strand at 2840.701 kb on - strand at 2840.769 kb on + strand at 2840.905 kb on - strand, within BWI76_RS13630 at 2841.158 kb on + strand, within BWI76_RS13630 at 2841.166 kb on - strand, within BWI76_RS13630 at 2841.243 kb on - strand, within BWI76_RS13630 at 2841.320 kb on - strand at 2841.396 kb on + strand, within BWI76_RS13630 at 2841.466 kb on - strand at 2841.823 kb on + strand, within BWI76_RS13635 at 2842.030 kb on - strand, within BWI76_RS13635 at 2842.254 kb on - strand, within BWI76_RS13635 at 2842.957 kb on + strand, within BWI76_RS13640
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 2,840,546 - +0.4 2,840,672 + -0.1 2,840,701 - +0.2 2,840,769 + -0.4 2,840,905 - BWI76_RS13630 0.14 +0.2 2,841,158 + BWI76_RS13630 0.50 -0.5 2,841,166 - BWI76_RS13630 0.51 -0.0 2,841,243 - BWI76_RS13630 0.62 -0.2 2,841,320 - +0.6 2,841,396 + BWI76_RS13630 0.84 +1.2 2,841,466 - +0.0 2,841,823 + BWI76_RS13635 0.33 +0.3 2,842,030 - BWI76_RS13635 0.54 -0.4 2,842,254 - BWI76_RS13635 0.78 -0.1 2,842,957 + BWI76_RS13640 0.12 -0.3
Or see this region's nucleotide sequence