Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10470 and BWI76_RS10475 are separated by 23 nucleotides BWI76_RS10475 and BWI76_RS10480 are separated by 0 nucleotides
BWI76_RS10470: BWI76_RS10470 - iron ABC transporter substrate-binding protein, at 2,211,755 to 2,212,771
_RS10470
BWI76_RS10475: BWI76_RS10475 - binding-protein-dependent transport system inner membrane protein, at 2,212,795 to 2,214,369
_RS10475
BWI76_RS10480: BWI76_RS10480 - amino acid ABC transporter substrate-binding protein, at 2,214,370 to 2,215,398
_RS10480
Position (kb)
2212
2213
2214
2215 Strain fitness (log2 ratio)
-1
0
1 at 2211.929 kb on - strand, within BWI76_RS10470 at 2211.937 kb on + strand, within BWI76_RS10470 at 2211.945 kb on - strand, within BWI76_RS10470 at 2212.080 kb on + strand, within BWI76_RS10470 at 2212.687 kb on + strand at 2212.801 kb on + strand at 2212.889 kb on + strand at 2213.006 kb on + strand, within BWI76_RS10475 at 2213.299 kb on + strand, within BWI76_RS10475 at 2213.357 kb on - strand, within BWI76_RS10475 at 2213.968 kb on - strand, within BWI76_RS10475 at 2214.160 kb on + strand, within BWI76_RS10475 at 2214.242 kb on + strand at 2214.616 kb on + strand, within BWI76_RS10480 at 2214.725 kb on + strand, within BWI76_RS10480 at 2214.753 kb on + strand, within BWI76_RS10480 at 2214.787 kb on - strand, within BWI76_RS10480 at 2214.854 kb on - strand, within BWI76_RS10480 at 2214.915 kb on + strand, within BWI76_RS10480 at 2214.923 kb on - strand, within BWI76_RS10480 at 2214.941 kb on + strand, within BWI76_RS10480 at 2214.978 kb on + strand, within BWI76_RS10480 at 2215.011 kb on + strand, within BWI76_RS10480 at 2215.029 kb on + strand, within BWI76_RS10480 at 2215.037 kb on - strand, within BWI76_RS10480 at 2215.037 kb on - strand at 2215.197 kb on + strand, within BWI76_RS10480 at 2215.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 2,211,929 - BWI76_RS10470 0.17 -0.8 2,211,937 + BWI76_RS10470 0.18 -0.4 2,211,945 - BWI76_RS10470 0.19 +0.4 2,212,080 + BWI76_RS10470 0.32 +0.1 2,212,687 + +0.5 2,212,801 + -0.0 2,212,889 + -0.4 2,213,006 + BWI76_RS10475 0.13 -0.9 2,213,299 + BWI76_RS10475 0.32 -1.4 2,213,357 - BWI76_RS10475 0.36 +0.4 2,213,968 - BWI76_RS10475 0.74 -0.0 2,214,160 + BWI76_RS10475 0.87 -0.1 2,214,242 + +0.1 2,214,616 + BWI76_RS10480 0.24 +0.7 2,214,725 + BWI76_RS10480 0.34 +0.1 2,214,753 + BWI76_RS10480 0.37 +0.7 2,214,787 - BWI76_RS10480 0.41 +0.1 2,214,854 - BWI76_RS10480 0.47 +0.1 2,214,915 + BWI76_RS10480 0.53 +0.1 2,214,923 - BWI76_RS10480 0.54 -0.1 2,214,941 + BWI76_RS10480 0.55 +0.1 2,214,978 + BWI76_RS10480 0.59 -0.3 2,215,011 + BWI76_RS10480 0.62 -0.1 2,215,029 + BWI76_RS10480 0.64 +0.2 2,215,037 - BWI76_RS10480 0.65 +0.2 2,215,037 - +0.7 2,215,197 + BWI76_RS10480 0.80 +0.4 2,215,358 + +0.0
Or see this region's nucleotide sequence