Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07905 and BWI76_RS07910 are separated by 157 nucleotides BWI76_RS07910 and BWI76_RS07915 overlap by 4 nucleotides BWI76_RS07915 and BWI76_RS07920 are separated by 173 nucleotides
BWI76_RS07905: BWI76_RS07905 - trimethylamine-N-oxide reductase (cytochrome c), at 1,678,470 to 1,680,779
_RS07905
BWI76_RS07910: BWI76_RS07910 - acireductone dioxygenase, at 1,680,937 to 1,681,479
_RS07910
BWI76_RS07915: BWI76_RS07915 - acireductone synthase, at 1,681,476 to 1,682,165
_RS07915
BWI76_RS07920: BWI76_RS07920 - methionine aminotransferase, at 1,682,339 to 1,683,499
_RS07920
Position (kb)
1681
1682
1683 Strain fitness (log2 ratio)
-2
-1
0
1 at 1681.480 kb on + strand at 1681.705 kb on - strand, within BWI76_RS07915 at 1681.779 kb on + strand, within BWI76_RS07915 at 1681.899 kb on + strand, within BWI76_RS07915 at 1681.906 kb on - strand, within BWI76_RS07915 at 1682.022 kb on - strand, within BWI76_RS07915 at 1682.089 kb on + strand, within BWI76_RS07915 at 1682.311 kb on - strand at 1682.737 kb on + strand, within BWI76_RS07920 at 1682.836 kb on + strand, within BWI76_RS07920 at 1682.842 kb on + strand, within BWI76_RS07920 at 1682.978 kb on + strand, within BWI76_RS07920 at 1683.133 kb on + strand, within BWI76_RS07920
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 1,681,480 + -0.2 1,681,705 - BWI76_RS07915 0.33 +1.0 1,681,779 + BWI76_RS07915 0.44 -0.4 1,681,899 + BWI76_RS07915 0.61 -2.1 1,681,906 - BWI76_RS07915 0.62 -0.3 1,682,022 - BWI76_RS07915 0.79 +0.1 1,682,089 + BWI76_RS07915 0.89 +1.0 1,682,311 - -0.6 1,682,737 + BWI76_RS07920 0.34 +0.5 1,682,836 + BWI76_RS07920 0.43 -1.7 1,682,842 + BWI76_RS07920 0.43 +0.9 1,682,978 + BWI76_RS07920 0.55 -0.3 1,683,133 + BWI76_RS07920 0.68 -0.0
Or see this region's nucleotide sequence