Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS33500 and RR42_RS33505 are separated by 235 nucleotides RR42_RS33505 and RR42_RS33510 are separated by 63 nucleotides RR42_RS33510 and RR42_RS33515 are separated by 118 nucleotides RR42_RS33515 and RR42_RS33520 are separated by 273 nucleotides
RR42_RS33500: RR42_RS33500 - 4-hydroxyphenylpyruvate dioxygenase, at 2,931,479 to 2,932,552
_RS33500
RR42_RS33505: RR42_RS33505 - AsnC family transcriptional regulator, at 2,932,788 to 2,933,261
_RS33505
RR42_RS33510: RR42_RS33510 - permease, at 2,933,325 to 2,934,599
_RS33510
RR42_RS33515: RR42_RS33515 - hypothetical protein, at 2,934,718 to 2,935,047
_RS33515
RR42_RS33520: RR42_RS33520 - ankyrin, at 2,935,321 to 2,937,795
_RS33520
Position (kb)
2933
2934
2935 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2932.348 kb on - strand, within RR42_RS33500 at 2932.475 kb on + strand at 2932.476 kb on - strand at 2932.476 kb on - strand at 2932.476 kb on - strand at 2932.588 kb on + strand at 2932.588 kb on + strand at 2932.588 kb on + strand at 2932.588 kb on + strand at 2932.589 kb on - strand at 2932.589 kb on - strand at 2932.589 kb on - strand at 2932.591 kb on + strand at 2932.592 kb on - strand at 2932.592 kb on - strand at 2932.658 kb on + strand at 2932.674 kb on + strand at 2932.674 kb on + strand at 2932.674 kb on + strand at 2932.691 kb on + strand at 2932.691 kb on + strand at 2932.691 kb on + strand at 2932.692 kb on - strand at 2932.692 kb on - strand at 2932.693 kb on + strand at 2932.693 kb on + strand at 2932.694 kb on - strand at 2932.694 kb on - strand at 2932.804 kb on + strand at 2932.950 kb on + strand, within RR42_RS33505 at 2933.000 kb on + strand, within RR42_RS33505 at 2933.000 kb on + strand, within RR42_RS33505 at 2933.001 kb on - strand, within RR42_RS33505 at 2933.001 kb on - strand, within RR42_RS33505 at 2933.112 kb on + strand, within RR42_RS33505 at 2933.112 kb on + strand, within RR42_RS33505 at 2933.113 kb on - strand, within RR42_RS33505 at 2933.113 kb on - strand, within RR42_RS33505 at 2933.113 kb on - strand, within RR42_RS33505 at 2933.113 kb on - strand, within RR42_RS33505 at 2933.365 kb on + strand at 2933.365 kb on + strand at 2933.419 kb on + strand at 2933.420 kb on - strand at 2933.420 kb on - strand at 2933.818 kb on + strand, within RR42_RS33510 at 2933.818 kb on + strand, within RR42_RS33510 at 2933.818 kb on + strand, within RR42_RS33510 at 2933.819 kb on - strand, within RR42_RS33510 at 2934.010 kb on + strand, within RR42_RS33510 at 2934.010 kb on + strand, within RR42_RS33510 at 2934.010 kb on + strand, within RR42_RS33510 at 2934.010 kb on + strand, within RR42_RS33510 at 2934.011 kb on - strand, within RR42_RS33510 at 2934.011 kb on - strand, within RR42_RS33510 at 2934.151 kb on + strand, within RR42_RS33510 at 2934.152 kb on - strand, within RR42_RS33510 at 2934.252 kb on - strand, within RR42_RS33510 at 2934.621 kb on - strand at 2934.633 kb on + strand at 2934.683 kb on - strand at 2934.687 kb on + strand at 2934.687 kb on + strand at 2934.785 kb on + strand, within RR42_RS33515 at 2934.785 kb on + strand, within RR42_RS33515 at 2934.786 kb on - strand, within RR42_RS33515 at 2934.786 kb on - strand, within RR42_RS33515 at 2934.811 kb on - strand, within RR42_RS33515 at 2934.811 kb on - strand, within RR42_RS33515 at 2934.896 kb on + strand, within RR42_RS33515 at 2934.928 kb on + strand, within RR42_RS33515 at 2934.928 kb on + strand, within RR42_RS33515 at 2934.929 kb on - strand, within RR42_RS33515 at 2934.929 kb on - strand, within RR42_RS33515 at 2934.970 kb on + strand, within RR42_RS33515 at 2934.970 kb on + strand, within RR42_RS33515 at 2935.024 kb on + strand at 2935.024 kb on + strand at 2935.025 kb on - strand at 2935.025 kb on - strand at 2935.025 kb on - strand at 2935.121 kb on + strand at 2935.121 kb on + strand at 2935.122 kb on - strand at 2935.124 kb on - strand at 2935.175 kb on - strand at 2935.175 kb on - strand at 2935.315 kb on + strand at 2935.315 kb on + strand at 2935.315 kb on + strand at 2935.316 kb on - strand at 2935.349 kb on + strand at 2935.349 kb on + strand at 2935.350 kb on - strand at 2935.350 kb on - strand at 2935.382 kb on + strand at 2935.382 kb on + strand at 2935.383 kb on - strand at 2935.585 kb on + strand, within RR42_RS33520 at 2935.585 kb on + strand, within RR42_RS33520 at 2935.585 kb on + strand, within RR42_RS33520 at 2935.585 kb on + strand, within RR42_RS33520 at 2935.585 kb on + strand, within RR42_RS33520 at 2935.585 kb on + strand, within RR42_RS33520
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 2,932,348 - RR42_RS33500 0.81 +0.7 2,932,475 + +1.2 2,932,476 - +0.5 2,932,476 - +0.2 2,932,476 - -0.7 2,932,588 + -0.3 2,932,588 + +0.1 2,932,588 + -1.5 2,932,588 + +0.4 2,932,589 - +0.3 2,932,589 - +1.0 2,932,589 - +1.8 2,932,591 + +0.2 2,932,592 - -0.7 2,932,592 - -0.1 2,932,658 + +1.2 2,932,674 + +0.7 2,932,674 + +0.5 2,932,674 + -0.7 2,932,691 + +0.2 2,932,691 + +2.1 2,932,691 + +0.2 2,932,692 - -1.1 2,932,692 - -1.4 2,932,693 + +1.0 2,932,693 + -0.1 2,932,694 - -0.4 2,932,694 - -0.2 2,932,804 + +0.3 2,932,950 + RR42_RS33505 0.34 -0.7 2,933,000 + RR42_RS33505 0.45 -0.9 2,933,000 + RR42_RS33505 0.45 -0.7 2,933,001 - RR42_RS33505 0.45 +0.1 2,933,001 - RR42_RS33505 0.45 +0.2 2,933,112 + RR42_RS33505 0.68 -1.0 2,933,112 + RR42_RS33505 0.68 -0.6 2,933,113 - RR42_RS33505 0.69 +1.7 2,933,113 - RR42_RS33505 0.69 +2.1 2,933,113 - RR42_RS33505 0.69 -1.5 2,933,113 - RR42_RS33505 0.69 -0.7 2,933,365 + +0.4 2,933,365 + -1.0 2,933,419 + +0.4 2,933,420 - -0.1 2,933,420 - +0.5 2,933,818 + RR42_RS33510 0.39 -0.5 2,933,818 + RR42_RS33510 0.39 -1.6 2,933,818 + RR42_RS33510 0.39 -0.1 2,933,819 - RR42_RS33510 0.39 +0.2 2,934,010 + RR42_RS33510 0.54 -1.5 2,934,010 + RR42_RS33510 0.54 -0.3 2,934,010 + RR42_RS33510 0.54 -0.4 2,934,010 + RR42_RS33510 0.54 -1.4 2,934,011 - RR42_RS33510 0.54 +0.7 2,934,011 - RR42_RS33510 0.54 -1.2 2,934,151 + RR42_RS33510 0.65 +0.2 2,934,152 - RR42_RS33510 0.65 -1.2 2,934,252 - RR42_RS33510 0.73 +1.2 2,934,621 - -0.4 2,934,633 + +0.5 2,934,683 - -0.3 2,934,687 + -0.5 2,934,687 + +2.1 2,934,785 + RR42_RS33515 0.20 +1.3 2,934,785 + RR42_RS33515 0.20 +0.2 2,934,786 - RR42_RS33515 0.21 +0.2 2,934,786 - RR42_RS33515 0.21 -0.7 2,934,811 - RR42_RS33515 0.28 +0.5 2,934,811 - RR42_RS33515 0.28 +1.4 2,934,896 + RR42_RS33515 0.54 -0.0 2,934,928 + RR42_RS33515 0.64 +0.1 2,934,928 + RR42_RS33515 0.64 +0.1 2,934,929 - RR42_RS33515 0.64 +0.5 2,934,929 - RR42_RS33515 0.64 +1.1 2,934,970 + RR42_RS33515 0.76 -0.6 2,934,970 + RR42_RS33515 0.76 +0.7 2,935,024 + +0.4 2,935,024 + -1.1 2,935,025 - +0.1 2,935,025 - -0.7 2,935,025 - +0.2 2,935,121 + +0.2 2,935,121 + -0.0 2,935,122 - +3.1 2,935,124 - +0.1 2,935,175 - -0.7 2,935,175 - +0.1 2,935,315 + -0.9 2,935,315 + +0.4 2,935,315 + -0.7 2,935,316 - +0.1 2,935,349 + -0.9 2,935,349 + +0.5 2,935,350 - -0.4 2,935,350 - +0.8 2,935,382 + -0.4 2,935,382 + -0.5 2,935,383 - -1.4 2,935,585 + RR42_RS33520 0.11 +0.1 2,935,585 + RR42_RS33520 0.11 +0.4 2,935,585 + RR42_RS33520 0.11 +0.3 2,935,585 + RR42_RS33520 0.11 +0.9 2,935,585 + RR42_RS33520 0.11 +1.1 2,935,585 + RR42_RS33520 0.11 -0.5
Or see this region's nucleotide sequence