Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33510

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS33500 and RR42_RS33505 are separated by 235 nucleotidesRR42_RS33505 and RR42_RS33510 are separated by 63 nucleotidesRR42_RS33510 and RR42_RS33515 are separated by 118 nucleotidesRR42_RS33515 and RR42_RS33520 are separated by 273 nucleotides RR42_RS33500: RR42_RS33500 - 4-hydroxyphenylpyruvate dioxygenase, at 2,931,479 to 2,932,552 _RS33500 RR42_RS33505: RR42_RS33505 - AsnC family transcriptional regulator, at 2,932,788 to 2,933,261 _RS33505 RR42_RS33510: RR42_RS33510 - permease, at 2,933,325 to 2,934,599 _RS33510 RR42_RS33515: RR42_RS33515 - hypothetical protein, at 2,934,718 to 2,935,047 _RS33515 RR42_RS33520: RR42_RS33520 - ankyrin, at 2,935,321 to 2,937,795 _RS33520 Position (kb) 2933 2934 2935Strain fitness (log2 ratio) -1 0 1 2 3at 2932.348 kb on - strand, within RR42_RS33500at 2932.475 kb on + strandat 2932.476 kb on - strandat 2932.476 kb on - strandat 2932.476 kb on - strandat 2932.588 kb on + strandat 2932.588 kb on + strandat 2932.588 kb on + strandat 2932.588 kb on + strandat 2932.589 kb on - strandat 2932.589 kb on - strandat 2932.589 kb on - strandat 2932.591 kb on + strandat 2932.592 kb on - strandat 2932.592 kb on - strandat 2932.658 kb on + strandat 2932.674 kb on + strandat 2932.674 kb on + strandat 2932.674 kb on + strandat 2932.691 kb on + strandat 2932.691 kb on + strandat 2932.691 kb on + strandat 2932.692 kb on - strandat 2932.692 kb on - strandat 2932.693 kb on + strandat 2932.693 kb on + strandat 2932.694 kb on - strandat 2932.694 kb on - strandat 2932.804 kb on + strandat 2932.950 kb on + strand, within RR42_RS33505at 2933.000 kb on + strand, within RR42_RS33505at 2933.000 kb on + strand, within RR42_RS33505at 2933.001 kb on - strand, within RR42_RS33505at 2933.001 kb on - strand, within RR42_RS33505at 2933.112 kb on + strand, within RR42_RS33505at 2933.112 kb on + strand, within RR42_RS33505at 2933.113 kb on - strand, within RR42_RS33505at 2933.113 kb on - strand, within RR42_RS33505at 2933.113 kb on - strand, within RR42_RS33505at 2933.113 kb on - strand, within RR42_RS33505at 2933.365 kb on + strandat 2933.365 kb on + strandat 2933.419 kb on + strandat 2933.420 kb on - strandat 2933.420 kb on - strandat 2933.818 kb on + strand, within RR42_RS33510at 2933.818 kb on + strand, within RR42_RS33510at 2933.818 kb on + strand, within RR42_RS33510at 2933.819 kb on - strand, within RR42_RS33510at 2934.010 kb on + strand, within RR42_RS33510at 2934.010 kb on + strand, within RR42_RS33510at 2934.010 kb on + strand, within RR42_RS33510at 2934.010 kb on + strand, within RR42_RS33510at 2934.011 kb on - strand, within RR42_RS33510at 2934.011 kb on - strand, within RR42_RS33510at 2934.151 kb on + strand, within RR42_RS33510at 2934.152 kb on - strand, within RR42_RS33510at 2934.252 kb on - strand, within RR42_RS33510at 2934.621 kb on - strandat 2934.633 kb on + strandat 2934.683 kb on - strandat 2934.687 kb on + strandat 2934.687 kb on + strandat 2934.785 kb on + strand, within RR42_RS33515at 2934.785 kb on + strand, within RR42_RS33515at 2934.786 kb on - strand, within RR42_RS33515at 2934.786 kb on - strand, within RR42_RS33515at 2934.811 kb on - strand, within RR42_RS33515at 2934.811 kb on - strand, within RR42_RS33515at 2934.896 kb on + strand, within RR42_RS33515at 2934.928 kb on + strand, within RR42_RS33515at 2934.928 kb on + strand, within RR42_RS33515at 2934.929 kb on - strand, within RR42_RS33515at 2934.929 kb on - strand, within RR42_RS33515at 2934.970 kb on + strand, within RR42_RS33515at 2934.970 kb on + strand, within RR42_RS33515at 2935.024 kb on + strandat 2935.024 kb on + strandat 2935.025 kb on - strandat 2935.025 kb on - strandat 2935.025 kb on - strandat 2935.121 kb on + strandat 2935.121 kb on + strandat 2935.122 kb on - strandat 2935.124 kb on - strandat 2935.175 kb on - strandat 2935.175 kb on - strandat 2935.315 kb on + strandat 2935.315 kb on + strandat 2935.315 kb on + strandat 2935.316 kb on - strandat 2935.349 kb on + strandat 2935.349 kb on + strandat 2935.350 kb on - strandat 2935.350 kb on - strandat 2935.382 kb on + strandat 2935.382 kb on + strandat 2935.383 kb on - strandat 2935.585 kb on + strand, within RR42_RS33520at 2935.585 kb on + strand, within RR42_RS33520at 2935.585 kb on + strand, within RR42_RS33520at 2935.585 kb on + strand, within RR42_RS33520at 2935.585 kb on + strand, within RR42_RS33520at 2935.585 kb on + strand, within RR42_RS33520

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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2,932,348 - RR42_RS33500 0.81 +0.7
2,932,475 + +1.2
2,932,476 - +0.5
2,932,476 - +0.2
2,932,476 - -0.7
2,932,588 + -0.3
2,932,588 + +0.1
2,932,588 + -1.5
2,932,588 + +0.4
2,932,589 - +0.3
2,932,589 - +1.0
2,932,589 - +1.8
2,932,591 + +0.2
2,932,592 - -0.7
2,932,592 - -0.1
2,932,658 + +1.2
2,932,674 + +0.7
2,932,674 + +0.5
2,932,674 + -0.7
2,932,691 + +0.2
2,932,691 + +2.1
2,932,691 + +0.2
2,932,692 - -1.1
2,932,692 - -1.4
2,932,693 + +1.0
2,932,693 + -0.1
2,932,694 - -0.4
2,932,694 - -0.2
2,932,804 + +0.3
2,932,950 + RR42_RS33505 0.34 -0.7
2,933,000 + RR42_RS33505 0.45 -0.9
2,933,000 + RR42_RS33505 0.45 -0.7
2,933,001 - RR42_RS33505 0.45 +0.1
2,933,001 - RR42_RS33505 0.45 +0.2
2,933,112 + RR42_RS33505 0.68 -1.0
2,933,112 + RR42_RS33505 0.68 -0.6
2,933,113 - RR42_RS33505 0.69 +1.7
2,933,113 - RR42_RS33505 0.69 +2.1
2,933,113 - RR42_RS33505 0.69 -1.5
2,933,113 - RR42_RS33505 0.69 -0.7
2,933,365 + +0.4
2,933,365 + -1.0
2,933,419 + +0.4
2,933,420 - -0.1
2,933,420 - +0.5
2,933,818 + RR42_RS33510 0.39 -0.5
2,933,818 + RR42_RS33510 0.39 -1.6
2,933,818 + RR42_RS33510 0.39 -0.1
2,933,819 - RR42_RS33510 0.39 +0.2
2,934,010 + RR42_RS33510 0.54 -1.5
2,934,010 + RR42_RS33510 0.54 -0.3
2,934,010 + RR42_RS33510 0.54 -0.4
2,934,010 + RR42_RS33510 0.54 -1.4
2,934,011 - RR42_RS33510 0.54 +0.7
2,934,011 - RR42_RS33510 0.54 -1.2
2,934,151 + RR42_RS33510 0.65 +0.2
2,934,152 - RR42_RS33510 0.65 -1.2
2,934,252 - RR42_RS33510 0.73 +1.2
2,934,621 - -0.4
2,934,633 + +0.5
2,934,683 - -0.3
2,934,687 + -0.5
2,934,687 + +2.1
2,934,785 + RR42_RS33515 0.20 +1.3
2,934,785 + RR42_RS33515 0.20 +0.2
2,934,786 - RR42_RS33515 0.21 +0.2
2,934,786 - RR42_RS33515 0.21 -0.7
2,934,811 - RR42_RS33515 0.28 +0.5
2,934,811 - RR42_RS33515 0.28 +1.4
2,934,896 + RR42_RS33515 0.54 -0.0
2,934,928 + RR42_RS33515 0.64 +0.1
2,934,928 + RR42_RS33515 0.64 +0.1
2,934,929 - RR42_RS33515 0.64 +0.5
2,934,929 - RR42_RS33515 0.64 +1.1
2,934,970 + RR42_RS33515 0.76 -0.6
2,934,970 + RR42_RS33515 0.76 +0.7
2,935,024 + +0.4
2,935,024 + -1.1
2,935,025 - +0.1
2,935,025 - -0.7
2,935,025 - +0.2
2,935,121 + +0.2
2,935,121 + -0.0
2,935,122 - +3.1
2,935,124 - +0.1
2,935,175 - -0.7
2,935,175 - +0.1
2,935,315 + -0.9
2,935,315 + +0.4
2,935,315 + -0.7
2,935,316 - +0.1
2,935,349 + -0.9
2,935,349 + +0.5
2,935,350 - -0.4
2,935,350 - +0.8
2,935,382 + -0.4
2,935,382 + -0.5
2,935,383 - -1.4
2,935,585 + RR42_RS33520 0.11 +0.1
2,935,585 + RR42_RS33520 0.11 +0.4
2,935,585 + RR42_RS33520 0.11 +0.3
2,935,585 + RR42_RS33520 0.11 +0.9
2,935,585 + RR42_RS33520 0.11 +1.1
2,935,585 + RR42_RS33520 0.11 -0.5

Or see this region's nucleotide sequence