Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27735 and RR42_RS27740 are separated by 140 nucleotides RR42_RS27740 and RR42_RS27745 are separated by 21 nucleotides RR42_RS27745 and RR42_RS27750 are separated by 127 nucleotides RR42_RS27750 and RR42_RS27755 are separated by 31 nucleotides
RR42_RS27735: RR42_RS27735 - GntR family transcriptional regulator, at 1,585,904 to 1,586,632
_RS27735
RR42_RS27740: RR42_RS27740 - fumarate hydratase, at 1,586,773 to 1,588,266
_RS27740
RR42_RS27745: RR42_RS27745 - hypothetical protein, at 1,588,288 to 1,588,515
_RS27745
RR42_RS27750: RR42_RS27750 - membrane protein, at 1,588,643 to 1,589,107
_RS27750
RR42_RS27755: RR42_RS27755 - rhombosortase, at 1,589,139 to 1,589,663
_RS27755
Position (kb)
1586
1587
1588
1589 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1585.839 kb on + strand at 1585.839 kb on + strand at 1585.840 kb on - strand at 1586.064 kb on + strand, within RR42_RS27735 at 1586.064 kb on + strand, within RR42_RS27735 at 1586.065 kb on - strand, within RR42_RS27735 at 1586.065 kb on - strand, within RR42_RS27735 at 1586.172 kb on - strand, within RR42_RS27735 at 1586.224 kb on + strand, within RR42_RS27735 at 1586.224 kb on + strand, within RR42_RS27735 at 1586.225 kb on - strand, within RR42_RS27735 at 1586.226 kb on + strand, within RR42_RS27735 at 1586.226 kb on + strand, within RR42_RS27735 at 1586.226 kb on + strand, within RR42_RS27735 at 1586.226 kb on + strand, within RR42_RS27735 at 1586.226 kb on + strand, within RR42_RS27735 at 1586.227 kb on - strand, within RR42_RS27735 at 1586.227 kb on - strand, within RR42_RS27735 at 1586.336 kb on + strand, within RR42_RS27735 at 1586.336 kb on + strand, within RR42_RS27735 at 1586.337 kb on - strand, within RR42_RS27735 at 1586.337 kb on - strand, within RR42_RS27735 at 1586.538 kb on - strand, within RR42_RS27735 at 1586.604 kb on - strand at 1586.604 kb on - strand at 1586.822 kb on + strand at 1586.823 kb on - strand at 1586.827 kb on + strand at 1586.827 kb on + strand at 1586.828 kb on - strand at 1586.828 kb on - strand at 1586.828 kb on - strand at 1586.828 kb on - strand at 1586.836 kb on + strand at 1586.836 kb on + strand at 1586.837 kb on - strand at 1586.839 kb on + strand at 1586.839 kb on + strand at 1586.840 kb on - strand at 1587.426 kb on + strand, within RR42_RS27740 at 1587.426 kb on + strand, within RR42_RS27740 at 1587.427 kb on - strand, within RR42_RS27740 at 1587.560 kb on + strand, within RR42_RS27740 at 1587.560 kb on + strand, within RR42_RS27740 at 1587.848 kb on + strand, within RR42_RS27740 at 1587.849 kb on - strand, within RR42_RS27740 at 1587.904 kb on + strand, within RR42_RS27740 at 1587.904 kb on + strand, within RR42_RS27740 at 1587.904 kb on + strand, within RR42_RS27740 at 1587.905 kb on - strand, within RR42_RS27740 at 1587.907 kb on + strand, within RR42_RS27740 at 1587.907 kb on + strand, within RR42_RS27740 at 1587.908 kb on - strand, within RR42_RS27740 at 1587.960 kb on + strand, within RR42_RS27740 at 1587.961 kb on - strand, within RR42_RS27740 at 1588.087 kb on + strand, within RR42_RS27740 at 1588.114 kb on + strand, within RR42_RS27740 at 1588.183 kb on + strand at 1588.183 kb on + strand at 1588.183 kb on + strand at 1588.184 kb on - strand at 1588.184 kb on - strand at 1588.203 kb on + strand at 1588.204 kb on - strand at 1588.245 kb on - strand at 1588.245 kb on - strand at 1588.264 kb on + strand at 1588.265 kb on - strand at 1588.265 kb on - strand at 1588.289 kb on + strand at 1588.290 kb on - strand at 1588.290 kb on - strand at 1588.290 kb on - strand at 1588.424 kb on + strand, within RR42_RS27745 at 1588.425 kb on - strand, within RR42_RS27745 at 1588.425 kb on - strand, within RR42_RS27745 at 1588.460 kb on + strand, within RR42_RS27745 at 1588.460 kb on + strand, within RR42_RS27745 at 1588.461 kb on - strand, within RR42_RS27745 at 1588.561 kb on + strand at 1588.561 kb on + strand at 1588.562 kb on - strand at 1588.562 kb on - strand at 1588.892 kb on + strand, within RR42_RS27750 at 1588.892 kb on + strand, within RR42_RS27750 at 1588.892 kb on + strand, within RR42_RS27750 at 1588.892 kb on + strand, within RR42_RS27750 at 1588.893 kb on - strand, within RR42_RS27750 at 1588.893 kb on - strand, within RR42_RS27750 at 1588.919 kb on + strand, within RR42_RS27750 at 1588.919 kb on + strand, within RR42_RS27750 at 1588.962 kb on + strand, within RR42_RS27750 at 1588.962 kb on + strand, within RR42_RS27750 at 1588.963 kb on - strand, within RR42_RS27750 at 1588.979 kb on + strand, within RR42_RS27750 at 1588.997 kb on + strand, within RR42_RS27750 at 1588.998 kb on - strand, within RR42_RS27750 at 1589.052 kb on + strand, within RR42_RS27750 at 1589.053 kb on - strand, within RR42_RS27750 at 1589.053 kb on - strand, within RR42_RS27750 at 1589.066 kb on + strand at 1589.067 kb on - strand at 1589.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 1,585,839 + +0.8 1,585,839 + -1.4 1,585,840 - -0.1 1,586,064 + RR42_RS27735 0.22 -2.8 1,586,064 + RR42_RS27735 0.22 +0.5 1,586,065 - RR42_RS27735 0.22 -2.4 1,586,065 - RR42_RS27735 0.22 -1.9 1,586,172 - RR42_RS27735 0.37 -2.3 1,586,224 + RR42_RS27735 0.44 -1.5 1,586,224 + RR42_RS27735 0.44 -1.7 1,586,225 - RR42_RS27735 0.44 -0.7 1,586,226 + RR42_RS27735 0.44 +0.7 1,586,226 + RR42_RS27735 0.44 -1.7 1,586,226 + RR42_RS27735 0.44 -0.3 1,586,226 + RR42_RS27735 0.44 -0.9 1,586,226 + RR42_RS27735 0.44 -1.7 1,586,227 - RR42_RS27735 0.44 +0.5 1,586,227 - RR42_RS27735 0.44 +0.5 1,586,336 + RR42_RS27735 0.59 -1.2 1,586,336 + RR42_RS27735 0.59 -0.9 1,586,337 - RR42_RS27735 0.59 -1.8 1,586,337 - RR42_RS27735 0.59 -3.6 1,586,538 - RR42_RS27735 0.87 -4.1 1,586,604 - -1.0 1,586,604 - -2.4 1,586,822 + +1.6 1,586,823 - +0.9 1,586,827 + +0.3 1,586,827 + +0.0 1,586,828 - +0.1 1,586,828 - +0.7 1,586,828 - +0.7 1,586,828 - -0.5 1,586,836 + -1.9 1,586,836 + +0.2 1,586,837 - -1.3 1,586,839 + +0.6 1,586,839 + +1.2 1,586,840 - +1.5 1,587,426 + RR42_RS27740 0.44 +0.3 1,587,426 + RR42_RS27740 0.44 -0.4 1,587,427 - RR42_RS27740 0.44 -0.9 1,587,560 + RR42_RS27740 0.53 +2.7 1,587,560 + RR42_RS27740 0.53 -0.0 1,587,848 + RR42_RS27740 0.72 +1.1 1,587,849 - RR42_RS27740 0.72 -1.1 1,587,904 + RR42_RS27740 0.76 -1.3 1,587,904 + RR42_RS27740 0.76 +0.3 1,587,904 + RR42_RS27740 0.76 +2.1 1,587,905 - RR42_RS27740 0.76 -0.2 1,587,907 + RR42_RS27740 0.76 +0.5 1,587,907 + RR42_RS27740 0.76 -0.8 1,587,908 - RR42_RS27740 0.76 -1.1 1,587,960 + RR42_RS27740 0.79 +0.3 1,587,961 - RR42_RS27740 0.80 -3.1 1,588,087 + RR42_RS27740 0.88 -0.3 1,588,114 + RR42_RS27740 0.90 +0.2 1,588,183 + +0.1 1,588,183 + +0.0 1,588,183 + -1.1 1,588,184 - +2.1 1,588,184 - +0.5 1,588,203 + -1.1 1,588,204 - +0.1 1,588,245 - -1.4 1,588,245 - -0.4 1,588,264 + +2.3 1,588,265 - +0.6 1,588,265 - +1.2 1,588,289 + +0.8 1,588,290 - -0.5 1,588,290 - -0.7 1,588,290 - -0.9 1,588,424 + RR42_RS27745 0.60 -0.7 1,588,425 - RR42_RS27745 0.60 -0.7 1,588,425 - RR42_RS27745 0.60 -0.2 1,588,460 + RR42_RS27745 0.75 -1.1 1,588,460 + RR42_RS27745 0.75 -0.4 1,588,461 - RR42_RS27745 0.76 -1.7 1,588,561 + -1.3 1,588,561 + +0.5 1,588,562 - +0.9 1,588,562 - +0.8 1,588,892 + RR42_RS27750 0.54 +0.1 1,588,892 + RR42_RS27750 0.54 -0.9 1,588,892 + RR42_RS27750 0.54 -0.0 1,588,892 + RR42_RS27750 0.54 +0.0 1,588,893 - RR42_RS27750 0.54 -0.3 1,588,893 - RR42_RS27750 0.54 +1.1 1,588,919 + RR42_RS27750 0.59 +0.0 1,588,919 + RR42_RS27750 0.59 -0.6 1,588,962 + RR42_RS27750 0.69 +0.3 1,588,962 + RR42_RS27750 0.69 -0.2 1,588,963 - RR42_RS27750 0.69 -1.1 1,588,979 + RR42_RS27750 0.72 +1.1 1,588,997 + RR42_RS27750 0.76 +0.3 1,588,998 - RR42_RS27750 0.76 +0.5 1,589,052 + RR42_RS27750 0.88 -0.6 1,589,053 - RR42_RS27750 0.88 +1.3 1,589,053 - RR42_RS27750 0.88 +0.1 1,589,066 + -2.1 1,589,067 - +0.3 1,589,106 - -0.3
Or see this region's nucleotide sequence