Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26360 and RR42_RS26365 are separated by 517 nucleotides RR42_RS26365 and RR42_RS26370 are separated by 26 nucleotides RR42_RS26370 and RR42_RS26375 are separated by 68 nucleotides
RR42_RS26360: RR42_RS26360 - alcohol dehydrogenase, at 1,271,028 to 1,272,005
_RS26360
RR42_RS26365: RR42_RS26365 - dienelactone hydrolase, at 1,272,523 to 1,273,341
_RS26365
RR42_RS26370: RR42_RS26370 - tautomerase, at 1,273,368 to 1,273,760
_RS26370
RR42_RS26375: RR42_RS26375 - hypothetical protein, at 1,273,829 to 1,274,275
_RS26375
Position (kb) 1272
1273
1274 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1271.540 kb on + strand, within RR42_RS26360 at 1271.542 kb on + strand, within RR42_RS26360 at 1271.542 kb on + strand, within RR42_RS26360 at 1271.543 kb on - strand, within RR42_RS26360 at 1271.629 kb on + strand, within RR42_RS26360 at 1271.642 kb on - strand, within RR42_RS26360 at 1271.642 kb on - strand, within RR42_RS26360 at 1271.994 kb on + strand at 1271.994 kb on + strand at 1271.995 kb on - strand at 1271.995 kb on - strand at 1271.995 kb on - strand at 1271.998 kb on + strand at 1271.998 kb on + strand at 1271.999 kb on - strand at 1271.999 kb on - strand at 1271.999 kb on - strand at 1272.076 kb on - strand at 1272.117 kb on + strand at 1272.118 kb on - strand at 1272.194 kb on - strand at 1272.208 kb on + strand at 1272.208 kb on + strand at 1272.209 kb on - strand at 1272.292 kb on + strand at 1272.293 kb on - strand at 1272.348 kb on - strand at 1272.348 kb on - strand at 1272.378 kb on - strand at 1272.726 kb on - strand, within RR42_RS26365 at 1272.726 kb on - strand, within RR42_RS26365 at 1273.145 kb on + strand, within RR42_RS26365 at 1273.145 kb on + strand, within RR42_RS26365 at 1273.558 kb on + strand, within RR42_RS26370 at 1273.558 kb on + strand, within RR42_RS26370 at 1273.878 kb on - strand, within RR42_RS26375 at 1274.046 kb on + strand, within RR42_RS26375 at 1274.046 kb on + strand, within RR42_RS26375 at 1274.047 kb on - strand, within RR42_RS26375 at 1274.047 kb on - strand, within RR42_RS26375 at 1274.187 kb on + strand, within RR42_RS26375 at 1274.187 kb on + strand, within RR42_RS26375 at 1274.187 kb on + strand, within RR42_RS26375 at 1274.187 kb on + strand, within RR42_RS26375 at 1274.188 kb on - strand, within RR42_RS26375 at 1274.188 kb on - strand, within RR42_RS26375 at 1274.188 kb on - strand, within RR42_RS26375 at 1274.242 kb on - strand at 1274.242 kb on - strand at 1274.242 kb on - strand at 1274.259 kb on + strand at 1274.259 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 1,271,540 + RR42_RS26360 0.52 -0.0 1,271,542 + RR42_RS26360 0.53 +0.6 1,271,542 + RR42_RS26360 0.53 +0.1 1,271,543 - RR42_RS26360 0.53 +0.0 1,271,629 + RR42_RS26360 0.61 -0.1 1,271,642 - RR42_RS26360 0.63 -1.0 1,271,642 - RR42_RS26360 0.63 +0.2 1,271,994 + +1.6 1,271,994 + -1.0 1,271,995 - +1.3 1,271,995 - -0.5 1,271,995 - +0.1 1,271,998 + -0.3 1,271,998 + +1.4 1,271,999 - -0.3 1,271,999 - +1.1 1,271,999 - -0.2 1,272,076 - -0.3 1,272,117 + -1.0 1,272,118 - +0.6 1,272,194 - -0.9 1,272,208 + +1.5 1,272,208 + +1.0 1,272,209 - +0.4 1,272,292 + -0.9 1,272,293 - +0.4 1,272,348 - +0.6 1,272,348 - +1.8 1,272,378 - +0.1 1,272,726 - RR42_RS26365 0.25 +1.4 1,272,726 - RR42_RS26365 0.25 +0.1 1,273,145 + RR42_RS26365 0.76 -1.2 1,273,145 + RR42_RS26365 0.76 +0.1 1,273,558 + RR42_RS26370 0.48 -1.4 1,273,558 + RR42_RS26370 0.48 -0.3 1,273,878 - RR42_RS26375 0.11 +1.1 1,274,046 + RR42_RS26375 0.49 -2.0 1,274,046 + RR42_RS26375 0.49 -1.8 1,274,047 - RR42_RS26375 0.49 -1.8 1,274,047 - RR42_RS26375 0.49 -0.1 1,274,187 + RR42_RS26375 0.80 -0.3 1,274,187 + RR42_RS26375 0.80 -1.5 1,274,187 + RR42_RS26375 0.80 -0.3 1,274,187 + RR42_RS26375 0.80 +0.1 1,274,188 - RR42_RS26375 0.80 +0.8 1,274,188 - RR42_RS26375 0.80 +0.4 1,274,188 - RR42_RS26375 0.80 -0.9 1,274,242 - -1.6 1,274,242 - +2.5 1,274,242 - +0.5 1,274,259 + -0.8 1,274,259 + -0.7
Or see this region's nucleotide sequence