Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26240

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS26235 and RR42_RS26240 are separated by 500 nucleotidesRR42_RS26240 and RR42_RS26245 are separated by 106 nucleotides RR42_RS26235: RR42_RS26235 - GntR family transcriptional regulator, at 1,243,315 to 1,244,064 _RS26235 RR42_RS26240: RR42_RS26240 - 4-aminobutyrate aminotransferase, at 1,244,565 to 1,245,827 _RS26240 RR42_RS26245: RR42_RS26245 - thiamine pyrophosphate-binding protein, at 1,245,934 to 1,247,661 _RS26245 Position (kb) 1244 1245 1246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1243.593 kb on + strand, within RR42_RS26235at 1243.846 kb on + strand, within RR42_RS26235at 1243.847 kb on - strand, within RR42_RS26235at 1243.872 kb on + strand, within RR42_RS26235at 1243.874 kb on + strand, within RR42_RS26235at 1244.027 kb on + strandat 1244.056 kb on + strandat 1244.056 kb on + strandat 1244.056 kb on + strandat 1244.056 kb on + strandat 1244.057 kb on - strandat 1244.106 kb on - strandat 1244.106 kb on - strandat 1244.285 kb on + strandat 1244.413 kb on - strandat 1244.446 kb on + strandat 1244.446 kb on + strandat 1244.637 kb on + strandat 1244.638 kb on - strandat 1244.689 kb on - strandat 1244.689 kb on - strandat 1244.724 kb on - strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.817 kb on + strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1244.818 kb on - strand, within RR42_RS26240at 1245.024 kb on + strand, within RR42_RS26240at 1245.024 kb on + strand, within RR42_RS26240at 1245.025 kb on - strand, within RR42_RS26240at 1245.025 kb on - strand, within RR42_RS26240at 1245.078 kb on + strand, within RR42_RS26240at 1245.330 kb on + strand, within RR42_RS26240at 1245.331 kb on - strand, within RR42_RS26240at 1245.331 kb on - strand, within RR42_RS26240at 1245.732 kb on + strandat 1245.733 kb on - strandat 1245.733 kb on - strandat 1246.054 kb on + strandat 1246.054 kb on + strandat 1246.054 kb on + strandat 1246.055 kb on - strandat 1246.055 kb on - strandat 1246.055 kb on - strandat 1246.136 kb on - strand, within RR42_RS26245at 1246.136 kb on - strand, within RR42_RS26245at 1246.136 kb on - strand, within RR42_RS26245at 1246.292 kb on - strand, within RR42_RS26245at 1246.760 kb on + strand, within RR42_RS26245at 1246.822 kb on + strand, within RR42_RS26245at 1246.822 kb on + strand, within RR42_RS26245at 1246.823 kb on - strand, within RR42_RS26245at 1246.823 kb on - strand, within RR42_RS26245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
1,243,593 + RR42_RS26235 0.37 -2.0
1,243,846 + RR42_RS26235 0.71 +0.3
1,243,847 - RR42_RS26235 0.71 -1.1
1,243,872 + RR42_RS26235 0.74 +2.1
1,243,874 + RR42_RS26235 0.75 -2.2
1,244,027 + -1.9
1,244,056 + +0.1
1,244,056 + -2.1
1,244,056 + -1.5
1,244,056 + +0.9
1,244,057 - -2.8
1,244,106 - +1.0
1,244,106 - -0.6
1,244,285 + +0.2
1,244,413 - +1.1
1,244,446 + +1.1
1,244,446 + -0.3
1,244,637 + +1.5
1,244,638 - -1.9
1,244,689 - -1.4
1,244,689 - -0.0
1,244,724 - RR42_RS26240 0.13 +0.1
1,244,817 + RR42_RS26240 0.20 -1.0
1,244,817 + RR42_RS26240 0.20 +1.4
1,244,817 + RR42_RS26240 0.20 -2.0
1,244,817 + RR42_RS26240 0.20 +0.8
1,244,817 + RR42_RS26240 0.20 -1.0
1,244,817 + RR42_RS26240 0.20 -0.3
1,244,817 + RR42_RS26240 0.20 +0.3
1,244,817 + RR42_RS26240 0.20 +0.8
1,244,818 - RR42_RS26240 0.20 -1.1
1,244,818 - RR42_RS26240 0.20 +1.6
1,244,818 - RR42_RS26240 0.20 -1.6
1,244,818 - RR42_RS26240 0.20 -1.4
1,244,818 - RR42_RS26240 0.20 +0.5
1,244,818 - RR42_RS26240 0.20 +0.7
1,244,818 - RR42_RS26240 0.20 +0.0
1,245,024 + RR42_RS26240 0.36 +0.6
1,245,024 + RR42_RS26240 0.36 +1.1
1,245,025 - RR42_RS26240 0.36 +0.3
1,245,025 - RR42_RS26240 0.36 -0.8
1,245,078 + RR42_RS26240 0.41 -0.3
1,245,330 + RR42_RS26240 0.61 -0.2
1,245,331 - RR42_RS26240 0.61 +0.1
1,245,331 - RR42_RS26240 0.61 +0.7
1,245,732 + -1.7
1,245,733 - +0.8
1,245,733 - -0.6
1,246,054 + +0.1
1,246,054 + -1.1
1,246,054 + +0.6
1,246,055 - -0.1
1,246,055 - -0.0
1,246,055 - -0.2
1,246,136 - RR42_RS26245 0.12 -0.1
1,246,136 - RR42_RS26245 0.12 +0.1
1,246,136 - RR42_RS26245 0.12 -1.2
1,246,292 - RR42_RS26245 0.21 -2.3
1,246,760 + RR42_RS26245 0.48 -0.5
1,246,822 + RR42_RS26245 0.51 -0.4
1,246,822 + RR42_RS26245 0.51 +0.1
1,246,823 - RR42_RS26245 0.51 -1.2
1,246,823 - RR42_RS26245 0.51 -1.5

Or see this region's nucleotide sequence