Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24885 and RR42_RS24890 are separated by 346 nucleotides RR42_RS24890 and RR42_RS24895 are separated by 88 nucleotides
RR42_RS24885: RR42_RS24885 - IclR family transcriptional regulator, at 920,641 to 921,420
_RS24885
RR42_RS24890: RR42_RS24890 - acetate--CoA ligase, at 921,767 to 923,695
_RS24890
RR42_RS24895: RR42_RS24895 - enoyl-CoA hydratase, at 923,784 to 924,614
_RS24895
Position (kb) 921
922
923
924 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 920.875 kb on + strand, within RR42_RS24885 at 920.876 kb on - strand, within RR42_RS24885 at 920.967 kb on + strand, within RR42_RS24885 at 920.986 kb on + strand, within RR42_RS24885 at 920.986 kb on + strand, within RR42_RS24885 at 920.986 kb on + strand, within RR42_RS24885 at 920.987 kb on - strand, within RR42_RS24885 at 920.987 kb on - strand, within RR42_RS24885 at 920.987 kb on - strand, within RR42_RS24885 at 921.115 kb on + strand, within RR42_RS24885 at 921.115 kb on + strand, within RR42_RS24885 at 921.116 kb on - strand, within RR42_RS24885 at 921.173 kb on + strand, within RR42_RS24885 at 921.173 kb on + strand, within RR42_RS24885 at 921.173 kb on + strand, within RR42_RS24885 at 921.244 kb on + strand, within RR42_RS24885 at 921.444 kb on - strand at 921.470 kb on - strand at 921.525 kb on + strand at 921.594 kb on + strand at 921.741 kb on - strand at 921.852 kb on - strand at 921.950 kb on + strand at 921.950 kb on + strand at 921.951 kb on - strand at 921.951 kb on - strand at 921.954 kb on + strand at 921.955 kb on - strand at 921.955 kb on - strand at 922.109 kb on + strand, within RR42_RS24890 at 922.554 kb on - strand, within RR42_RS24890 at 922.751 kb on + strand, within RR42_RS24890 at 922.752 kb on - strand, within RR42_RS24890 at 922.752 kb on - strand, within RR42_RS24890 at 922.870 kb on + strand, within RR42_RS24890 at 922.995 kb on - strand, within RR42_RS24890 at 923.550 kb on + strand at 923.551 kb on - strand at 923.612 kb on + strand at 923.613 kb on - strand at 923.702 kb on - strand at 923.734 kb on + strand at 923.735 kb on - strand at 923.769 kb on + strand at 923.769 kb on + strand at 923.827 kb on - strand at 923.863 kb on + strand at 924.096 kb on + strand, within RR42_RS24895 at 924.097 kb on - strand, within RR42_RS24895 at 924.227 kb on + strand, within RR42_RS24895 at 924.303 kb on + strand, within RR42_RS24895 at 924.459 kb on + strand, within RR42_RS24895 at 924.459 kb on + strand, within RR42_RS24895 at 924.692 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 920,875 + RR42_RS24885 0.30 +2.3 920,876 - RR42_RS24885 0.30 -0.1 920,967 + RR42_RS24885 0.42 -1.0 920,986 + RR42_RS24885 0.44 +0.1 920,986 + RR42_RS24885 0.44 -0.6 920,986 + RR42_RS24885 0.44 -0.1 920,987 - RR42_RS24885 0.44 -1.5 920,987 - RR42_RS24885 0.44 +3.1 920,987 - RR42_RS24885 0.44 +1.1 921,115 + RR42_RS24885 0.61 -0.4 921,115 + RR42_RS24885 0.61 -0.9 921,116 - RR42_RS24885 0.61 -0.1 921,173 + RR42_RS24885 0.68 +1.6 921,173 + RR42_RS24885 0.68 +0.4 921,173 + RR42_RS24885 0.68 -0.4 921,244 + RR42_RS24885 0.77 +2.1 921,444 - -0.7 921,470 - +0.7 921,525 + +0.5 921,594 + +1.7 921,741 - -1.7 921,852 - -0.5 921,950 + -0.1 921,950 + +0.3 921,951 - +1.7 921,951 - +1.9 921,954 + +1.2 921,955 - -1.2 921,955 - -0.3 922,109 + RR42_RS24890 0.18 -1.2 922,554 - RR42_RS24890 0.41 +0.9 922,751 + RR42_RS24890 0.51 -0.0 922,752 - RR42_RS24890 0.51 -0.1 922,752 - RR42_RS24890 0.51 -1.6 922,870 + RR42_RS24890 0.57 -0.9 922,995 - RR42_RS24890 0.64 -0.6 923,550 + -1.3 923,551 - +1.1 923,612 + +2.1 923,613 - +1.3 923,702 - +0.3 923,734 + +0.0 923,735 - -1.1 923,769 + +0.0 923,769 + -0.4 923,827 - +3.1 923,863 + -2.0 924,096 + RR42_RS24895 0.38 -0.1 924,097 - RR42_RS24895 0.38 -1.4 924,227 + RR42_RS24895 0.53 -0.1 924,303 + RR42_RS24895 0.62 -0.1 924,459 + RR42_RS24895 0.81 +0.6 924,459 + RR42_RS24895 0.81 -0.9 924,692 + -0.3
Or see this region's nucleotide sequence