Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24705 and RR42_RS24710 are separated by 108 nucleotides RR42_RS24710 and RR42_RS24715 are separated by 2 nucleotides
RR42_RS24705: RR42_RS24705 - aldehyde dehydrogenase, at 878,852 to 880,273
_RS24705
RR42_RS24710: RR42_RS24710 - alpha/beta hydrolase, at 880,382 to 881,338
_RS24710
RR42_RS24715: RR42_RS24715 - FAD-containing monooxygenase EthA, at 881,341 to 882,867
_RS24715
Position (kb) 880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 879.414 kb on + strand, within RR42_RS24705 at 879.414 kb on + strand, within RR42_RS24705 at 879.415 kb on - strand, within RR42_RS24705 at 879.510 kb on + strand, within RR42_RS24705 at 879.510 kb on + strand, within RR42_RS24705 at 879.785 kb on + strand, within RR42_RS24705 at 879.786 kb on - strand, within RR42_RS24705 at 879.910 kb on - strand, within RR42_RS24705 at 879.910 kb on - strand, within RR42_RS24705 at 880.284 kb on - strand at 880.475 kb on + strand at 881.049 kb on + strand, within RR42_RS24710 at 881.259 kb on + strand at 881.259 kb on + strand at 881.260 kb on - strand at 881.260 kb on - strand at 881.462 kb on + strand at 881.462 kb on + strand at 881.463 kb on - strand at 881.532 kb on - strand, within RR42_RS24715 at 881.619 kb on + strand, within RR42_RS24715 at 881.619 kb on + strand, within RR42_RS24715 at 881.620 kb on - strand, within RR42_RS24715 at 881.695 kb on - strand, within RR42_RS24715 at 881.705 kb on + strand, within RR42_RS24715 at 881.706 kb on - strand, within RR42_RS24715 at 882.093 kb on - strand, within RR42_RS24715 at 882.141 kb on - strand, within RR42_RS24715 at 882.212 kb on + strand, within RR42_RS24715 at 882.213 kb on - strand, within RR42_RS24715 at 882.213 kb on - strand, within RR42_RS24715 at 882.323 kb on + strand, within RR42_RS24715 at 882.324 kb on - strand, within RR42_RS24715
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 879,414 + RR42_RS24705 0.40 -0.2 879,414 + RR42_RS24705 0.40 -0.4 879,415 - RR42_RS24705 0.40 -0.2 879,510 + RR42_RS24705 0.46 +0.5 879,510 + RR42_RS24705 0.46 -0.4 879,785 + RR42_RS24705 0.66 +0.5 879,786 - RR42_RS24705 0.66 -0.3 879,910 - RR42_RS24705 0.74 -3.0 879,910 - RR42_RS24705 0.74 -0.4 880,284 - -0.1 880,475 + +0.0 881,049 + RR42_RS24710 0.70 +0.9 881,259 + -1.0 881,259 + -0.1 881,260 - -1.2 881,260 - -0.8 881,462 + -0.4 881,462 + +0.4 881,463 - +0.2 881,532 - RR42_RS24715 0.13 +0.5 881,619 + RR42_RS24715 0.18 -0.1 881,619 + RR42_RS24715 0.18 -0.9 881,620 - RR42_RS24715 0.18 +2.1 881,695 - RR42_RS24715 0.23 -1.0 881,705 + RR42_RS24715 0.24 +0.2 881,706 - RR42_RS24715 0.24 -1.1 882,093 - RR42_RS24715 0.49 -0.1 882,141 - RR42_RS24715 0.52 +0.6 882,212 + RR42_RS24715 0.57 -0.3 882,213 - RR42_RS24715 0.57 +0.0 882,213 - RR42_RS24715 0.57 -1.4 882,323 + RR42_RS24715 0.64 -1.7 882,324 - RR42_RS24715 0.64 -0.1
Or see this region's nucleotide sequence