Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24430 and RR42_RS24435 are separated by 23 nucleotides RR42_RS24435 and RR42_RS24440 are separated by 130 nucleotides
RR42_RS24430: RR42_RS24430 - biphenyl 2,3-dioxygenase, at 814,390 to 814,965
_RS24430
RR42_RS24435: RR42_RS24435 - FAD-monooxygenase, at 814,989 to 816,626
_RS24435
RR42_RS24440: RR42_RS24440 - hypothetical protein, at 816,757 to 818,061
_RS24440
Position (kb) 814
815
816
817 Strain fitness (log2 ratio) -2
-1
0
1
2 at 813.993 kb on + strand at 813.994 kb on - strand at 814.033 kb on - strand at 814.079 kb on + strand at 814.080 kb on - strand at 814.080 kb on - strand at 814.082 kb on + strand at 814.083 kb on - strand at 814.141 kb on + strand at 814.164 kb on - strand at 814.164 kb on - strand at 814.231 kb on + strand at 814.232 kb on - strand at 814.319 kb on + strand at 814.320 kb on - strand at 814.320 kb on - strand at 814.320 kb on - strand at 814.335 kb on + strand at 814.336 kb on - strand at 814.339 kb on + strand at 814.339 kb on + strand at 814.339 kb on + strand at 814.340 kb on - strand at 814.378 kb on + strand at 814.379 kb on - strand at 814.457 kb on - strand, within RR42_RS24430 at 814.474 kb on + strand, within RR42_RS24430 at 814.477 kb on + strand, within RR42_RS24430 at 814.478 kb on - strand, within RR42_RS24430 at 814.478 kb on - strand, within RR42_RS24430 at 814.478 kb on - strand, within RR42_RS24430 at 814.478 kb on - strand, within RR42_RS24430 at 814.491 kb on - strand, within RR42_RS24430 at 814.491 kb on - strand, within RR42_RS24430 at 814.537 kb on + strand, within RR42_RS24430 at 814.537 kb on + strand, within RR42_RS24430 at 814.537 kb on + strand, within RR42_RS24430 at 814.538 kb on - strand, within RR42_RS24430 at 814.565 kb on + strand, within RR42_RS24430 at 814.660 kb on - strand, within RR42_RS24430 at 814.663 kb on + strand, within RR42_RS24430 at 814.663 kb on + strand, within RR42_RS24430 at 814.664 kb on - strand, within RR42_RS24430 at 814.664 kb on - strand, within RR42_RS24430 at 814.704 kb on + strand, within RR42_RS24430 at 814.705 kb on - strand, within RR42_RS24430 at 814.705 kb on - strand, within RR42_RS24430 at 814.705 kb on - strand, within RR42_RS24430 at 814.705 kb on - strand, within RR42_RS24430 at 814.732 kb on + strand, within RR42_RS24430 at 814.733 kb on - strand, within RR42_RS24430 at 814.733 kb on - strand, within RR42_RS24430 at 814.814 kb on - strand, within RR42_RS24430 at 815.100 kb on - strand at 815.152 kb on - strand at 815.232 kb on - strand, within RR42_RS24435 at 815.512 kb on - strand, within RR42_RS24435 at 815.512 kb on - strand, within RR42_RS24435 at 815.512 kb on - strand, within RR42_RS24435 at 815.540 kb on + strand, within RR42_RS24435 at 815.541 kb on - strand, within RR42_RS24435 at 815.541 kb on - strand, within RR42_RS24435 at 815.541 kb on - strand, within RR42_RS24435 at 815.660 kb on + strand, within RR42_RS24435 at 815.683 kb on + strand, within RR42_RS24435 at 815.705 kb on + strand, within RR42_RS24435 at 815.706 kb on - strand, within RR42_RS24435 at 815.706 kb on - strand, within RR42_RS24435 at 815.706 kb on - strand, within RR42_RS24435 at 815.770 kb on + strand, within RR42_RS24435 at 815.771 kb on - strand, within RR42_RS24435 at 815.852 kb on + strand, within RR42_RS24435 at 815.853 kb on - strand, within RR42_RS24435 at 815.853 kb on - strand, within RR42_RS24435 at 815.853 kb on - strand, within RR42_RS24435 at 815.853 kb on - strand, within RR42_RS24435 at 815.919 kb on + strand, within RR42_RS24435 at 816.015 kb on + strand, within RR42_RS24435 at 816.015 kb on + strand, within RR42_RS24435 at 816.015 kb on + strand, within RR42_RS24435 at 816.015 kb on + strand, within RR42_RS24435 at 816.016 kb on - strand, within RR42_RS24435 at 816.016 kb on - strand, within RR42_RS24435 at 816.102 kb on + strand, within RR42_RS24435 at 816.102 kb on + strand, within RR42_RS24435 at 816.102 kb on + strand, within RR42_RS24435 at 816.102 kb on + strand, within RR42_RS24435 at 816.103 kb on - strand, within RR42_RS24435 at 816.103 kb on - strand, within RR42_RS24435 at 816.103 kb on - strand, within RR42_RS24435 at 816.231 kb on + strand, within RR42_RS24435 at 816.231 kb on + strand, within RR42_RS24435 at 816.232 kb on - strand, within RR42_RS24435 at 816.291 kb on + strand, within RR42_RS24435 at 816.291 kb on + strand, within RR42_RS24435 at 816.291 kb on + strand, within RR42_RS24435 at 816.291 kb on + strand, within RR42_RS24435 at 816.292 kb on - strand, within RR42_RS24435 at 816.292 kb on - strand, within RR42_RS24435 at 816.357 kb on + strand, within RR42_RS24435 at 816.357 kb on + strand, within RR42_RS24435 at 816.358 kb on - strand, within RR42_RS24435 at 816.358 kb on - strand, within RR42_RS24435 at 816.440 kb on - strand, within RR42_RS24435 at 816.492 kb on + strand at 816.493 kb on - strand at 816.493 kb on - strand at 816.582 kb on + strand at 816.582 kb on + strand at 816.583 kb on - strand at 816.654 kb on - strand at 816.654 kb on - strand at 816.654 kb on - strand at 816.672 kb on + strand at 816.673 kb on - strand at 816.673 kb on - strand at 816.738 kb on - strand at 816.779 kb on + strand at 816.780 kb on - strand at 816.780 kb on - strand at 816.780 kb on - strand at 816.780 kb on - strand at 816.780 kb on - strand at 816.887 kb on + strand at 816.910 kb on + strand, within RR42_RS24440 at 817.006 kb on + strand, within RR42_RS24440 at 817.179 kb on + strand, within RR42_RS24440 at 817.362 kb on + strand, within RR42_RS24440 at 817.363 kb on - strand, within RR42_RS24440 at 817.393 kb on + strand, within RR42_RS24440 at 817.408 kb on - strand, within RR42_RS24440 at 817.418 kb on + strand, within RR42_RS24440 at 817.442 kb on + strand, within RR42_RS24440 at 817.442 kb on + strand, within RR42_RS24440 at 817.442 kb on + strand, within RR42_RS24440 at 817.443 kb on - strand, within RR42_RS24440 at 817.447 kb on - strand, within RR42_RS24440
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 813,993 + -1.1 813,994 - +0.5 814,033 - -0.8 814,079 + -1.1 814,080 - -0.5 814,080 - -0.3 814,082 + +0.5 814,083 - -0.0 814,141 + +0.1 814,164 - +0.3 814,164 - +0.3 814,231 + -0.2 814,232 - -0.6 814,319 + +0.3 814,320 - +0.5 814,320 - -0.3 814,320 - +0.5 814,335 + +0.1 814,336 - -0.2 814,339 + -1.9 814,339 + +1.1 814,339 + +0.3 814,340 - -1.6 814,378 + -0.1 814,379 - -0.9 814,457 - RR42_RS24430 0.12 -1.1 814,474 + RR42_RS24430 0.15 -0.9 814,477 + RR42_RS24430 0.15 +0.2 814,478 - RR42_RS24430 0.15 +0.7 814,478 - RR42_RS24430 0.15 +0.6 814,478 - RR42_RS24430 0.15 +1.0 814,478 - RR42_RS24430 0.15 -1.5 814,491 - RR42_RS24430 0.18 +0.9 814,491 - RR42_RS24430 0.18 -0.8 814,537 + RR42_RS24430 0.26 -1.5 814,537 + RR42_RS24430 0.26 +0.1 814,537 + RR42_RS24430 0.26 -0.6 814,538 - RR42_RS24430 0.26 +0.2 814,565 + RR42_RS24430 0.30 +2.1 814,660 - RR42_RS24430 0.47 +0.2 814,663 + RR42_RS24430 0.47 -0.3 814,663 + RR42_RS24430 0.47 +1.9 814,664 - RR42_RS24430 0.48 +0.1 814,664 - RR42_RS24430 0.48 +0.9 814,704 + RR42_RS24430 0.55 +0.1 814,705 - RR42_RS24430 0.55 -0.3 814,705 - RR42_RS24430 0.55 -0.7 814,705 - RR42_RS24430 0.55 -0.9 814,705 - RR42_RS24430 0.55 +0.7 814,732 + RR42_RS24430 0.59 +1.1 814,733 - RR42_RS24430 0.60 -2.4 814,733 - RR42_RS24430 0.60 -0.1 814,814 - RR42_RS24430 0.74 -0.7 815,100 - +0.7 815,152 - +0.3 815,232 - RR42_RS24435 0.15 -0.7 815,512 - RR42_RS24435 0.32 -0.3 815,512 - RR42_RS24435 0.32 -0.1 815,512 - RR42_RS24435 0.32 +0.3 815,540 + RR42_RS24435 0.34 -1.1 815,541 - RR42_RS24435 0.34 -0.6 815,541 - RR42_RS24435 0.34 +0.4 815,541 - RR42_RS24435 0.34 +0.5 815,660 + RR42_RS24435 0.41 +0.3 815,683 + RR42_RS24435 0.42 +0.6 815,705 + RR42_RS24435 0.44 +0.4 815,706 - RR42_RS24435 0.44 -0.2 815,706 - RR42_RS24435 0.44 +0.2 815,706 - RR42_RS24435 0.44 +0.1 815,770 + RR42_RS24435 0.48 +1.4 815,771 - RR42_RS24435 0.48 +0.3 815,852 + RR42_RS24435 0.53 -0.1 815,853 - RR42_RS24435 0.53 -0.1 815,853 - RR42_RS24435 0.53 -0.7 815,853 - RR42_RS24435 0.53 +2.1 815,853 - RR42_RS24435 0.53 +1.4 815,919 + RR42_RS24435 0.57 +1.5 816,015 + RR42_RS24435 0.63 +2.7 816,015 + RR42_RS24435 0.63 +0.3 816,015 + RR42_RS24435 0.63 +0.2 816,015 + RR42_RS24435 0.63 +0.6 816,016 - RR42_RS24435 0.63 -0.5 816,016 - RR42_RS24435 0.63 -1.1 816,102 + RR42_RS24435 0.68 +1.3 816,102 + RR42_RS24435 0.68 -0.0 816,102 + RR42_RS24435 0.68 +1.3 816,102 + RR42_RS24435 0.68 +1.3 816,103 - RR42_RS24435 0.68 +0.3 816,103 - RR42_RS24435 0.68 +0.4 816,103 - RR42_RS24435 0.68 -0.2 816,231 + RR42_RS24435 0.76 +0.2 816,231 + RR42_RS24435 0.76 -1.0 816,232 - RR42_RS24435 0.76 +1.1 816,291 + RR42_RS24435 0.79 -0.8 816,291 + RR42_RS24435 0.79 +0.6 816,291 + RR42_RS24435 0.79 +1.1 816,291 + RR42_RS24435 0.79 -0.6 816,292 - RR42_RS24435 0.80 -0.3 816,292 - RR42_RS24435 0.80 +0.5 816,357 + RR42_RS24435 0.84 -0.1 816,357 + RR42_RS24435 0.84 +2.1 816,358 - RR42_RS24435 0.84 -1.1 816,358 - RR42_RS24435 0.84 +0.1 816,440 - RR42_RS24435 0.89 +0.5 816,492 + +0.4 816,493 - +1.5 816,493 - -1.5 816,582 + -0.6 816,582 + +0.7 816,583 - -0.2 816,654 - +0.2 816,654 - +0.2 816,654 - -0.5 816,672 + +0.6 816,673 - +0.1 816,673 - +1.3 816,738 - -1.7 816,779 + -0.3 816,780 - +1.7 816,780 - -0.4 816,780 - +1.3 816,780 - +0.6 816,780 - +0.6 816,887 + -0.5 816,910 + RR42_RS24440 0.12 -0.9 817,006 + RR42_RS24440 0.19 +0.1 817,179 + RR42_RS24440 0.32 -0.6 817,362 + RR42_RS24440 0.46 -0.7 817,363 - RR42_RS24440 0.46 -0.5 817,393 + RR42_RS24440 0.49 +0.3 817,408 - RR42_RS24440 0.50 -0.4 817,418 + RR42_RS24440 0.51 +0.7 817,442 + RR42_RS24440 0.52 -0.7 817,442 + RR42_RS24440 0.52 +0.3 817,442 + RR42_RS24440 0.52 -0.3 817,443 - RR42_RS24440 0.53 -1.2 817,447 - RR42_RS24440 0.53 -1.2
Or see this region's nucleotide sequence