Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24385 and RR42_RS24390 are separated by 37 nucleotides RR42_RS24390 and RR42_RS24395 are separated by 106 nucleotides RR42_RS24395 and RR42_RS24400 are separated by 42 nucleotides
RR42_RS24385: RR42_RS24385 - hypothetical protein, at 801,481 to 803,106
_RS24385
RR42_RS24390: RR42_RS24390 - aldehyde dehydrogenase, at 803,144 to 804,577
_RS24390
RR42_RS24395: RR42_RS24395 - hypothetical protein, at 804,684 to 804,872
_RS24395
RR42_RS24400: RR42_RS24400 - hypothetical protein, at 804,915 to 805,292
_RS24400
Position (kb) 803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 802.184 kb on + strand, within RR42_RS24385 at 802.187 kb on + strand, within RR42_RS24385 at 802.188 kb on - strand, within RR42_RS24385 at 802.188 kb on - strand, within RR42_RS24385 at 802.188 kb on - strand, within RR42_RS24385 at 802.188 kb on - strand, within RR42_RS24385 at 802.198 kb on + strand, within RR42_RS24385 at 802.199 kb on - strand, within RR42_RS24385 at 802.202 kb on + strand, within RR42_RS24385 at 802.202 kb on + strand, within RR42_RS24385 at 802.202 kb on + strand, within RR42_RS24385 at 802.203 kb on - strand, within RR42_RS24385 at 802.284 kb on + strand, within RR42_RS24385 at 802.284 kb on + strand, within RR42_RS24385 at 802.284 kb on + strand, within RR42_RS24385 at 802.284 kb on + strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.285 kb on - strand, within RR42_RS24385 at 802.358 kb on + strand, within RR42_RS24385 at 802.358 kb on + strand, within RR42_RS24385 at 802.400 kb on - strand, within RR42_RS24385 at 802.400 kb on - strand, within RR42_RS24385 at 802.400 kb on - strand, within RR42_RS24385 at 802.453 kb on + strand, within RR42_RS24385 at 802.472 kb on - strand, within RR42_RS24385 at 802.472 kb on - strand, within RR42_RS24385 at 802.539 kb on + strand, within RR42_RS24385 at 802.539 kb on + strand, within RR42_RS24385 at 802.560 kb on + strand, within RR42_RS24385 at 802.560 kb on + strand, within RR42_RS24385 at 802.561 kb on - strand, within RR42_RS24385 at 802.561 kb on - strand, within RR42_RS24385 at 802.561 kb on - strand, within RR42_RS24385 at 802.624 kb on - strand, within RR42_RS24385 at 802.732 kb on + strand, within RR42_RS24385 at 802.732 kb on + strand, within RR42_RS24385 at 802.732 kb on + strand, within RR42_RS24385 at 802.732 kb on + strand, within RR42_RS24385 at 802.733 kb on - strand, within RR42_RS24385 at 802.834 kb on + strand, within RR42_RS24385 at 802.835 kb on - strand, within RR42_RS24385 at 802.838 kb on + strand, within RR42_RS24385 at 802.967 kb on + strand at 802.967 kb on + strand at 802.982 kb on + strand at 802.991 kb on + strand at 802.992 kb on - strand at 803.119 kb on - strand at 803.129 kb on + strand at 803.130 kb on - strand at 803.142 kb on + strand at 803.143 kb on + strand at 803.144 kb on - strand at 803.144 kb on - strand at 803.149 kb on + strand at 803.149 kb on + strand at 803.149 kb on + strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.150 kb on - strand at 803.153 kb on + strand at 803.153 kb on + strand at 803.153 kb on + strand at 803.153 kb on + strand at 803.153 kb on + strand at 803.154 kb on - strand at 803.154 kb on - strand at 803.154 kb on - strand at 803.207 kb on + strand at 803.245 kb on + strand at 803.245 kb on + strand at 803.245 kb on + strand at 803.263 kb on + strand at 803.326 kb on + strand, within RR42_RS24390 at 803.327 kb on - strand, within RR42_RS24390 at 803.365 kb on - strand, within RR42_RS24390 at 803.461 kb on + strand, within RR42_RS24390 at 803.461 kb on + strand, within RR42_RS24390 at 803.461 kb on + strand, within RR42_RS24390 at 803.461 kb on + strand, within RR42_RS24390 at 803.471 kb on + strand, within RR42_RS24390 at 803.472 kb on - strand, within RR42_RS24390 at 803.546 kb on + strand, within RR42_RS24390 at 803.549 kb on - strand, within RR42_RS24390 at 803.565 kb on - strand, within RR42_RS24390 at 803.565 kb on - strand, within RR42_RS24390 at 803.565 kb on - strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.581 kb on + strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.582 kb on - strand, within RR42_RS24390 at 803.583 kb on + strand, within RR42_RS24390 at 803.583 kb on + strand, within RR42_RS24390 at 803.583 kb on + strand, within RR42_RS24390 at 803.584 kb on - strand, within RR42_RS24390 at 803.691 kb on + strand, within RR42_RS24390 at 803.708 kb on - strand, within RR42_RS24390 at 803.708 kb on - strand, within RR42_RS24390 at 803.872 kb on - strand, within RR42_RS24390 at 803.893 kb on - strand, within RR42_RS24390 at 803.893 kb on - strand, within RR42_RS24390 at 803.893 kb on - strand, within RR42_RS24390 at 803.893 kb on - strand, within RR42_RS24390 at 804.016 kb on - strand, within RR42_RS24390 at 804.071 kb on + strand, within RR42_RS24390 at 804.072 kb on - strand, within RR42_RS24390 at 804.072 kb on - strand, within RR42_RS24390 at 804.072 kb on - strand, within RR42_RS24390 at 804.143 kb on + strand, within RR42_RS24390 at 804.144 kb on - strand, within RR42_RS24390 at 804.144 kb on - strand, within RR42_RS24390 at 804.146 kb on + strand, within RR42_RS24390 at 804.147 kb on - strand, within RR42_RS24390 at 804.147 kb on - strand, within RR42_RS24390 at 804.147 kb on - strand, within RR42_RS24390 at 804.147 kb on - strand, within RR42_RS24390 at 804.147 kb on - strand, within RR42_RS24390 at 804.147 kb on - strand, within RR42_RS24390 at 804.153 kb on + strand, within RR42_RS24390 at 804.246 kb on - strand, within RR42_RS24390 at 804.248 kb on - strand, within RR42_RS24390 at 804.362 kb on + strand, within RR42_RS24390 at 804.363 kb on - strand, within RR42_RS24390 at 804.426 kb on + strand, within RR42_RS24390 at 804.426 kb on + strand, within RR42_RS24390 at 804.426 kb on + strand, within RR42_RS24390 at 804.426 kb on + strand, within RR42_RS24390 at 804.427 kb on - strand, within RR42_RS24390 at 804.427 kb on - strand, within RR42_RS24390 at 804.427 kb on - strand, within RR42_RS24390 at 804.443 kb on + strand at 804.443 kb on + strand at 804.443 kb on + strand at 804.444 kb on - strand at 804.444 kb on - strand at 804.444 kb on - strand at 804.444 kb on - strand at 804.455 kb on + strand at 804.455 kb on + strand at 804.456 kb on - strand at 804.456 kb on - strand at 804.456 kb on - strand at 804.492 kb on - strand at 804.492 kb on - strand at 804.492 kb on - strand at 804.492 kb on - strand at 804.542 kb on + strand at 804.543 kb on - strand at 804.543 kb on - strand at 804.544 kb on + strand at 804.544 kb on + strand at 804.545 kb on - strand at 804.574 kb on - strand at 804.574 kb on - strand at 804.574 kb on - strand at 804.607 kb on + strand at 804.677 kb on + strand at 804.677 kb on + strand at 804.678 kb on - strand at 804.781 kb on - strand, within RR42_RS24395 at 804.781 kb on - strand, within RR42_RS24395 at 804.798 kb on + strand, within RR42_RS24395 at 804.842 kb on + strand, within RR42_RS24395 at 804.842 kb on + strand, within RR42_RS24395 at 804.870 kb on + strand at 804.870 kb on + strand at 804.876 kb on + strand at 804.876 kb on + strand at 804.876 kb on + strand at 804.877 kb on - strand at 804.877 kb on - strand at 804.954 kb on + strand, within RR42_RS24400 at 804.954 kb on + strand, within RR42_RS24400 at 804.955 kb on - strand, within RR42_RS24400 at 805.048 kb on + strand, within RR42_RS24400 at 805.048 kb on + strand, within RR42_RS24400 at 805.049 kb on - strand, within RR42_RS24400 at 805.049 kb on - strand, within RR42_RS24400 at 805.049 kb on - strand, within RR42_RS24400 at 805.148 kb on + strand, within RR42_RS24400 at 805.148 kb on + strand, within RR42_RS24400 at 805.148 kb on + strand, within RR42_RS24400 at 805.179 kb on - strand, within RR42_RS24400 at 805.325 kb on + strand at 805.326 kb on - strand at 805.447 kb on + strand at 805.448 kb on - strand at 805.537 kb on + strand at 805.537 kb on + strand at 805.538 kb on - strand at 805.559 kb on + strand at 805.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 802,184 + RR42_RS24385 0.43 -0.6 802,187 + RR42_RS24385 0.43 -0.0 802,188 - RR42_RS24385 0.43 +1.2 802,188 - RR42_RS24385 0.43 -1.7 802,188 - RR42_RS24385 0.43 +0.1 802,188 - RR42_RS24385 0.43 +0.5 802,198 + RR42_RS24385 0.44 +0.8 802,199 - RR42_RS24385 0.44 -0.3 802,202 + RR42_RS24385 0.44 +0.6 802,202 + RR42_RS24385 0.44 +1.8 802,202 + RR42_RS24385 0.44 +0.1 802,203 - RR42_RS24385 0.44 -1.7 802,284 + RR42_RS24385 0.49 +1.7 802,284 + RR42_RS24385 0.49 -0.1 802,284 + RR42_RS24385 0.49 +0.6 802,284 + RR42_RS24385 0.49 -0.3 802,285 - RR42_RS24385 0.49 -1.1 802,285 - RR42_RS24385 0.49 -0.4 802,285 - RR42_RS24385 0.49 -0.2 802,285 - RR42_RS24385 0.49 -0.4 802,285 - RR42_RS24385 0.49 +1.5 802,358 + RR42_RS24385 0.54 +0.3 802,358 + RR42_RS24385 0.54 -3.1 802,400 - RR42_RS24385 0.57 +0.4 802,400 - RR42_RS24385 0.57 +2.6 802,400 - RR42_RS24385 0.57 +0.5 802,453 + RR42_RS24385 0.60 +0.2 802,472 - RR42_RS24385 0.61 -1.5 802,472 - RR42_RS24385 0.61 -0.2 802,539 + RR42_RS24385 0.65 +1.6 802,539 + RR42_RS24385 0.65 +1.1 802,560 + RR42_RS24385 0.66 -1.0 802,560 + RR42_RS24385 0.66 +0.6 802,561 - RR42_RS24385 0.66 -0.8 802,561 - RR42_RS24385 0.66 +2.1 802,561 - RR42_RS24385 0.66 +1.0 802,624 - RR42_RS24385 0.70 +0.4 802,732 + RR42_RS24385 0.77 -0.8 802,732 + RR42_RS24385 0.77 +0.2 802,732 + RR42_RS24385 0.77 +0.3 802,732 + RR42_RS24385 0.77 -0.9 802,733 - RR42_RS24385 0.77 -0.7 802,834 + RR42_RS24385 0.83 +0.1 802,835 - RR42_RS24385 0.83 +1.0 802,838 + RR42_RS24385 0.83 +0.1 802,967 + -0.5 802,967 + +0.7 802,982 + +1.7 802,991 + -1.5 802,992 - +0.3 803,119 - +0.7 803,129 + +0.3 803,130 - -0.6 803,142 + -1.5 803,143 + -1.5 803,144 - -0.1 803,144 - -0.2 803,149 + +1.2 803,149 + -0.8 803,149 + -0.5 803,150 - -0.5 803,150 - +0.6 803,150 - -1.1 803,150 - -0.3 803,150 - -0.7 803,150 - +0.1 803,153 + -0.8 803,153 + -0.1 803,153 + +0.5 803,153 + -1.3 803,153 + -0.2 803,154 - -1.7 803,154 - +1.1 803,154 - +1.3 803,207 + +0.7 803,245 + +0.5 803,245 + -0.8 803,245 + -0.6 803,263 + -0.5 803,326 + RR42_RS24390 0.13 -0.3 803,327 - RR42_RS24390 0.13 -0.7 803,365 - RR42_RS24390 0.15 -0.9 803,461 + RR42_RS24390 0.22 +0.6 803,461 + RR42_RS24390 0.22 -1.1 803,461 + RR42_RS24390 0.22 +2.0 803,461 + RR42_RS24390 0.22 -1.3 803,471 + RR42_RS24390 0.23 +0.7 803,472 - RR42_RS24390 0.23 -0.2 803,546 + RR42_RS24390 0.28 +0.7 803,549 - RR42_RS24390 0.28 +0.4 803,565 - RR42_RS24390 0.29 +0.6 803,565 - RR42_RS24390 0.29 -0.7 803,565 - RR42_RS24390 0.29 -0.0 803,581 + RR42_RS24390 0.30 +0.9 803,581 + RR42_RS24390 0.30 -1.1 803,581 + RR42_RS24390 0.30 +3.1 803,581 + RR42_RS24390 0.30 -0.7 803,581 + RR42_RS24390 0.30 +1.5 803,582 - RR42_RS24390 0.31 +0.8 803,582 - RR42_RS24390 0.31 +1.1 803,582 - RR42_RS24390 0.31 -0.3 803,582 - RR42_RS24390 0.31 +0.4 803,582 - RR42_RS24390 0.31 +0.2 803,583 + RR42_RS24390 0.31 +0.8 803,583 + RR42_RS24390 0.31 +0.5 803,583 + RR42_RS24390 0.31 -1.7 803,584 - RR42_RS24390 0.31 +0.3 803,691 + RR42_RS24390 0.38 -1.1 803,708 - RR42_RS24390 0.39 -0.7 803,708 - RR42_RS24390 0.39 -2.0 803,872 - RR42_RS24390 0.51 +0.1 803,893 - RR42_RS24390 0.52 -1.6 803,893 - RR42_RS24390 0.52 +0.4 803,893 - RR42_RS24390 0.52 -0.0 803,893 - RR42_RS24390 0.52 -0.0 804,016 - RR42_RS24390 0.61 +0.5 804,071 + RR42_RS24390 0.65 -0.3 804,072 - RR42_RS24390 0.65 +0.7 804,072 - RR42_RS24390 0.65 +0.8 804,072 - RR42_RS24390 0.65 +1.3 804,143 + RR42_RS24390 0.70 -1.8 804,144 - RR42_RS24390 0.70 -0.4 804,144 - RR42_RS24390 0.70 -1.2 804,146 + RR42_RS24390 0.70 -0.5 804,147 - RR42_RS24390 0.70 -0.1 804,147 - RR42_RS24390 0.70 +0.0 804,147 - RR42_RS24390 0.70 -1.1 804,147 - RR42_RS24390 0.70 +1.5 804,147 - RR42_RS24390 0.70 +1.3 804,147 - RR42_RS24390 0.70 +0.1 804,153 + RR42_RS24390 0.70 +0.1 804,246 - RR42_RS24390 0.77 +0.1 804,248 - RR42_RS24390 0.77 +1.0 804,362 + RR42_RS24390 0.85 +1.1 804,363 - RR42_RS24390 0.85 +0.4 804,426 + RR42_RS24390 0.89 -0.3 804,426 + RR42_RS24390 0.89 -1.8 804,426 + RR42_RS24390 0.89 +0.3 804,426 + RR42_RS24390 0.89 +0.3 804,427 - RR42_RS24390 0.89 -0.7 804,427 - RR42_RS24390 0.89 +0.5 804,427 - RR42_RS24390 0.89 +2.1 804,443 + -0.2 804,443 + -0.8 804,443 + +0.9 804,444 - -0.3 804,444 - -1.6 804,444 - +0.8 804,444 - -0.9 804,455 + +1.3 804,455 + +0.6 804,456 - -1.1 804,456 - +1.0 804,456 - -1.7 804,492 - +0.5 804,492 - -0.6 804,492 - +0.1 804,492 - -0.7 804,542 + +1.5 804,543 - -0.4 804,543 - +1.1 804,544 + -0.1 804,544 + +0.1 804,545 - +0.3 804,574 - -0.4 804,574 - -1.4 804,574 - -0.3 804,607 + -0.3 804,677 + +2.5 804,677 + -0.3 804,678 - +2.1 804,781 - RR42_RS24395 0.51 -0.6 804,781 - RR42_RS24395 0.51 -0.6 804,798 + RR42_RS24395 0.60 +3.1 804,842 + RR42_RS24395 0.84 -0.9 804,842 + RR42_RS24395 0.84 -1.5 804,870 + +0.9 804,870 + +1.1 804,876 + -0.2 804,876 + +0.8 804,876 + +0.1 804,877 - +0.5 804,877 - +1.0 804,954 + RR42_RS24400 0.10 +0.9 804,954 + RR42_RS24400 0.10 +0.2 804,955 - RR42_RS24400 0.11 +0.4 805,048 + RR42_RS24400 0.35 -1.6 805,048 + RR42_RS24400 0.35 -1.0 805,049 - RR42_RS24400 0.35 +1.1 805,049 - RR42_RS24400 0.35 +0.4 805,049 - RR42_RS24400 0.35 -3.2 805,148 + RR42_RS24400 0.62 +0.1 805,148 + RR42_RS24400 0.62 -0.9 805,148 + RR42_RS24400 0.62 +0.2 805,179 - RR42_RS24400 0.70 -0.1 805,325 + -1.5 805,326 - -0.5 805,447 + -0.3 805,448 - +1.3 805,537 + -0.4 805,537 + +2.1 805,538 - +1.5 805,559 + -0.9 805,559 + -0.3
Or see this region's nucleotide sequence