Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24255 and RR42_RS24260 are separated by 428 nucleotides
RR42_RS24255: RR42_RS24255 - hypothetical protein, at 767,663 to 768,619
_RS24255
RR42_RS24260: RR42_RS24260 - hypothetical protein, at 769,048 to 769,824
_RS24260
Position (kb) 769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 768.080 kb on + strand, within RR42_RS24255 at 768.081 kb on - strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.156 kb on - strand, within RR42_RS24255 at 768.203 kb on - strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.446 kb on + strand, within RR42_RS24255 at 768.446 kb on + strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.525 kb on + strand at 768.525 kb on + strand at 768.526 kb on - strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.565 kb on - strand at 768.565 kb on - strand at 768.565 kb on - strand at 768.565 kb on - strand at 768.583 kb on + strand at 768.584 kb on - strand at 768.586 kb on - strand at 768.617 kb on + strand at 768.758 kb on - strand at 768.786 kb on + strand at 768.786 kb on + strand at 768.857 kb on - strand at 768.943 kb on + strand at 768.943 kb on + strand at 768.943 kb on + strand at 768.943 kb on + strand at 768.964 kb on + strand at 768.964 kb on + strand at 769.026 kb on - strand at 769.026 kb on - strand at 769.034 kb on + strand at 769.175 kb on + strand, within RR42_RS24260 at 769.231 kb on + strand, within RR42_RS24260 at 769.318 kb on - strand, within RR42_RS24260 at 769.709 kb on + strand, within RR42_RS24260 at 769.726 kb on + strand, within RR42_RS24260 at 769.726 kb on + strand, within RR42_RS24260 at 769.726 kb on + strand, within RR42_RS24260 at 769.755 kb on + strand at 769.756 kb on - strand at 769.822 kb on + strand at 769.823 kb on - strand at 769.937 kb on + strand at 769.938 kb on - strand at 770.024 kb on + strand at 770.025 kb on - strand at 770.025 kb on - strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.027 kb on - strand at 770.027 kb on - strand at 770.027 kb on - strand at 770.027 kb on - strand at 770.027 kb on - strand at 770.032 kb on + strand at 770.033 kb on - strand at 770.033 kb on - strand at 770.053 kb on + strand at 770.076 kb on + strand at 770.077 kb on - strand at 770.095 kb on + strand at 770.123 kb on + strand at 770.123 kb on + strand at 770.123 kb on + strand at 770.123 kb on + strand at 770.123 kb on + strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.126 kb on - strand at 770.348 kb on - strand at 770.380 kb on + strand at 770.522 kb on + strand at 770.522 kb on + strand at 770.522 kb on + strand at 770.522 kb on + strand at 770.522 kb on + strand at 770.523 kb on - strand at 770.523 kb on - strand at 770.523 kb on - strand at 770.523 kb on - strand at 770.523 kb on - strand at 770.568 kb on + strand at 770.569 kb on - strand at 770.745 kb on + strand at 770.745 kb on + strand at 770.745 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 768,080 + RR42_RS24255 0.44 -0.4 768,081 - RR42_RS24255 0.44 +1.3 768,155 + RR42_RS24255 0.51 +0.5 768,155 + RR42_RS24255 0.51 +0.1 768,155 + RR42_RS24255 0.51 +0.7 768,155 + RR42_RS24255 0.51 -0.4 768,156 - RR42_RS24255 0.52 +0.1 768,203 - RR42_RS24255 0.56 -0.3 768,227 + RR42_RS24255 0.59 -0.7 768,227 + RR42_RS24255 0.59 -0.8 768,227 + RR42_RS24255 0.59 -0.1 768,227 + RR42_RS24255 0.59 +1.3 768,227 + RR42_RS24255 0.59 -0.2 768,446 + RR42_RS24255 0.82 +1.1 768,446 + RR42_RS24255 0.82 -1.8 768,447 - RR42_RS24255 0.82 -0.5 768,447 - RR42_RS24255 0.82 -0.3 768,447 - RR42_RS24255 0.82 -3.4 768,447 - RR42_RS24255 0.82 -1.8 768,525 + +0.1 768,525 + +0.4 768,526 - +1.1 768,564 + +1.0 768,564 + -0.5 768,564 + +0.8 768,564 + -0.4 768,565 - +0.3 768,565 - -0.5 768,565 - -0.2 768,565 - +0.5 768,583 + +0.8 768,584 - -0.9 768,586 - -0.5 768,617 + -1.0 768,758 - +0.6 768,786 + +1.6 768,786 + -0.1 768,857 - -1.7 768,943 + +1.2 768,943 + -1.8 768,943 + +1.1 768,943 + -0.4 768,964 + -1.0 768,964 + -0.6 769,026 - -1.0 769,026 - +0.4 769,034 + -1.6 769,175 + RR42_RS24260 0.16 +1.1 769,231 + RR42_RS24260 0.24 +0.3 769,318 - RR42_RS24260 0.35 +1.1 769,709 + RR42_RS24260 0.85 +0.2 769,726 + RR42_RS24260 0.87 -2.6 769,726 + RR42_RS24260 0.87 +0.2 769,726 + RR42_RS24260 0.87 -1.3 769,755 + -0.3 769,756 - +0.3 769,822 + +0.5 769,823 - -0.6 769,937 + +0.3 769,938 - +1.0 770,024 + +0.5 770,025 - -0.2 770,025 - +1.5 770,026 + +1.6 770,026 + +0.8 770,026 + -0.9 770,026 + -1.3 770,026 + -0.1 770,026 + +0.1 770,027 - -0.2 770,027 - +0.6 770,027 - -0.8 770,027 - -0.7 770,027 - -0.5 770,032 + -0.4 770,033 - -0.5 770,033 - -1.0 770,053 + -0.7 770,076 + -0.7 770,077 - +2.1 770,095 + -0.5 770,123 + +2.1 770,123 + -0.4 770,123 + +0.7 770,123 + +0.8 770,123 + -1.0 770,124 - +1.2 770,124 - -0.8 770,124 - +0.1 770,124 - +1.7 770,124 - -0.3 770,124 - +0.5 770,124 - +0.8 770,124 - -1.9 770,124 - +0.9 770,126 - +1.2 770,348 - -0.5 770,380 + +0.1 770,522 + +0.3 770,522 + -1.6 770,522 + +0.1 770,522 + +0.2 770,522 + -0.4 770,523 - -1.3 770,523 - -2.1 770,523 - -0.3 770,523 - -0.2 770,523 - -1.6 770,568 + -1.0 770,569 - -0.7 770,745 + -0.3 770,745 + -0.2 770,745 + +0.1
Or see this region's nucleotide sequence