Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23555 and RR42_RS23560 overlap by 8 nucleotides RR42_RS23560 and RR42_RS23565 overlap by 14 nucleotides RR42_RS23565 and RR42_RS23570 overlap by 11 nucleotides
RR42_RS23555: RR42_RS23555 - ATP synthase, at 610,069 to 611,532
_RS23555
RR42_RS23560: RR42_RS23560 - flagellar assembly protein FliH, at 611,525 to 612,382
_RS23560
RR42_RS23565: RR42_RS23565 - flagellar motor switch protein G, at 612,369 to 613,361
_RS23565
RR42_RS23570: RR42_RS23570 - flagellar M-ring protein FliF, at 613,351 to 615,060
_RS23570
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 611.523 kb on + strand at 611.524 kb on - strand at 611.524 kb on - strand at 611.524 kb on - strand at 611.524 kb on - strand at 611.789 kb on + strand, within RR42_RS23560 at 611.979 kb on + strand, within RR42_RS23560 at 611.979 kb on + strand, within RR42_RS23560 at 611.980 kb on - strand, within RR42_RS23560 at 612.028 kb on - strand, within RR42_RS23560 at 612.218 kb on - strand, within RR42_RS23560 at 612.376 kb on + strand at 612.376 kb on + strand at 612.376 kb on + strand at 612.377 kb on - strand at 612.377 kb on - strand at 612.399 kb on + strand at 612.430 kb on - strand at 612.430 kb on - strand at 612.733 kb on - strand, within RR42_RS23565 at 613.291 kb on - strand at 613.389 kb on + strand at 613.389 kb on + strand at 613.390 kb on - strand at 613.390 kb on - strand at 613.559 kb on + strand, within RR42_RS23570 at 613.560 kb on - strand, within RR42_RS23570 at 613.583 kb on - strand, within RR42_RS23570 at 613.625 kb on + strand, within RR42_RS23570 at 613.853 kb on + strand, within RR42_RS23570 at 613.853 kb on + strand, within RR42_RS23570 at 613.853 kb on + strand, within RR42_RS23570 at 613.921 kb on - strand, within RR42_RS23570 at 613.934 kb on + strand, within RR42_RS23570 at 613.935 kb on - strand, within RR42_RS23570 at 614.226 kb on - strand, within RR42_RS23570 at 614.226 kb on - strand, within RR42_RS23570 at 614.226 kb on - strand, within RR42_RS23570 at 614.336 kb on + strand, within RR42_RS23570 at 614.336 kb on + strand, within RR42_RS23570 at 614.337 kb on - strand, within RR42_RS23570
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 611,523 + -0.6 611,524 - +1.2 611,524 - +2.2 611,524 - -0.1 611,524 - +1.2 611,789 + RR42_RS23560 0.31 -0.8 611,979 + RR42_RS23560 0.53 -0.7 611,979 + RR42_RS23560 0.53 +0.1 611,980 - RR42_RS23560 0.53 +0.0 612,028 - RR42_RS23560 0.59 -1.3 612,218 - RR42_RS23560 0.81 -0.9 612,376 + -1.3 612,376 + -0.5 612,376 + +1.6 612,377 - -0.4 612,377 - -1.4 612,399 + -0.4 612,430 - +0.6 612,430 - +1.1 612,733 - RR42_RS23565 0.37 +1.3 613,291 - +1.8 613,389 + +0.5 613,389 + +0.6 613,390 - -0.3 613,390 - +1.2 613,559 + RR42_RS23570 0.12 +0.9 613,560 - RR42_RS23570 0.12 -1.6 613,583 - RR42_RS23570 0.14 +0.4 613,625 + RR42_RS23570 0.16 -3.0 613,853 + RR42_RS23570 0.29 +2.4 613,853 + RR42_RS23570 0.29 +0.8 613,853 + RR42_RS23570 0.29 -0.6 613,921 - RR42_RS23570 0.33 -0.5 613,934 + RR42_RS23570 0.34 -1.9 613,935 - RR42_RS23570 0.34 +1.5 614,226 - RR42_RS23570 0.51 -0.4 614,226 - RR42_RS23570 0.51 -0.1 614,226 - RR42_RS23570 0.51 -0.8 614,336 + RR42_RS23570 0.58 +1.2 614,336 + RR42_RS23570 0.58 +0.3 614,337 - RR42_RS23570 0.58 -0.3
Or see this region's nucleotide sequence