Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22800

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22795 and RR42_RS22800 are separated by 30 nucleotidesRR42_RS22800 and RR42_RS22805 are separated by 248 nucleotides RR42_RS22795: RR42_RS22795 - hypothetical protein, at 446,477 to 447,442 _RS22795 RR42_RS22800: RR42_RS22800 - DSBA oxidoreductase, at 447,473 to 449,029 _RS22800 RR42_RS22805: RR42_RS22805 - LysR family transcriptional regulator, at 449,278 to 450,153 _RS22805 Position (kb) 447 448 449 450Strain fitness (log2 ratio) -2 -1 0 1 2 3at 446.728 kb on + strand, within RR42_RS22795at 446.728 kb on + strand, within RR42_RS22795at 446.728 kb on + strand, within RR42_RS22795at 446.729 kb on - strand, within RR42_RS22795at 446.729 kb on - strand, within RR42_RS22795at 446.729 kb on - strand, within RR42_RS22795at 447.017 kb on + strand, within RR42_RS22795at 447.017 kb on + strand, within RR42_RS22795at 447.018 kb on - strand, within RR42_RS22795at 447.230 kb on + strand, within RR42_RS22795at 447.230 kb on + strand, within RR42_RS22795at 447.231 kb on - strand, within RR42_RS22795at 447.231 kb on - strand, within RR42_RS22795at 447.231 kb on - strand, within RR42_RS22795at 447.231 kb on - strand, within RR42_RS22795at 447.787 kb on - strand, within RR42_RS22800at 447.972 kb on + strand, within RR42_RS22800at 447.972 kb on + strand, within RR42_RS22800at 447.972 kb on + strand, within RR42_RS22800at 448.170 kb on + strand, within RR42_RS22800at 448.170 kb on + strand, within RR42_RS22800at 448.171 kb on - strand, within RR42_RS22800at 448.171 kb on - strand, within RR42_RS22800at 448.171 kb on - strand, within RR42_RS22800at 448.172 kb on + strand, within RR42_RS22800at 448.357 kb on + strand, within RR42_RS22800at 448.357 kb on + strand, within RR42_RS22800at 448.357 kb on + strand, within RR42_RS22800at 448.358 kb on - strand, within RR42_RS22800at 448.447 kb on + strand, within RR42_RS22800at 448.447 kb on + strand, within RR42_RS22800at 448.448 kb on - strand, within RR42_RS22800at 448.481 kb on - strand, within RR42_RS22800at 448.875 kb on + strandat 449.243 kb on - strandat 449.373 kb on + strand, within RR42_RS22805at 449.566 kb on + strand, within RR42_RS22805at 449.713 kb on + strand, within RR42_RS22805at 449.714 kb on - strand, within RR42_RS22805at 449.714 kb on - strand, within RR42_RS22805at 449.714 kb on - strand, within RR42_RS22805at 449.714 kb on - strand, within RR42_RS22805at 449.715 kb on + strand, within RR42_RS22805at 449.715 kb on + strand, within RR42_RS22805

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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446,728 + RR42_RS22795 0.26 +0.5
446,728 + RR42_RS22795 0.26 -0.7
446,728 + RR42_RS22795 0.26 -1.4
446,729 - RR42_RS22795 0.26 -1.1
446,729 - RR42_RS22795 0.26 +0.7
446,729 - RR42_RS22795 0.26 +1.1
447,017 + RR42_RS22795 0.56 +1.0
447,017 + RR42_RS22795 0.56 -0.0
447,018 - RR42_RS22795 0.56 +0.4
447,230 + RR42_RS22795 0.78 -1.0
447,230 + RR42_RS22795 0.78 +0.5
447,231 - RR42_RS22795 0.78 +0.7
447,231 - RR42_RS22795 0.78 +1.9
447,231 - RR42_RS22795 0.78 +0.5
447,231 - RR42_RS22795 0.78 +3.3
447,787 - RR42_RS22800 0.20 +0.4
447,972 + RR42_RS22800 0.32 +0.7
447,972 + RR42_RS22800 0.32 +0.9
447,972 + RR42_RS22800 0.32 +0.1
448,170 + RR42_RS22800 0.45 -1.8
448,170 + RR42_RS22800 0.45 -0.5
448,171 - RR42_RS22800 0.45 -1.0
448,171 - RR42_RS22800 0.45 +2.3
448,171 - RR42_RS22800 0.45 +0.6
448,172 + RR42_RS22800 0.45 +2.1
448,357 + RR42_RS22800 0.57 -0.7
448,357 + RR42_RS22800 0.57 -0.4
448,357 + RR42_RS22800 0.57 -1.3
448,358 - RR42_RS22800 0.57 +0.4
448,447 + RR42_RS22800 0.63 +0.6
448,447 + RR42_RS22800 0.63 +0.6
448,448 - RR42_RS22800 0.63 +0.3
448,481 - RR42_RS22800 0.65 +0.6
448,875 + +0.7
449,243 - -1.1
449,373 + RR42_RS22805 0.11 -0.2
449,566 + RR42_RS22805 0.33 +0.7
449,713 + RR42_RS22805 0.50 +0.3
449,714 - RR42_RS22805 0.50 -0.6
449,714 - RR42_RS22805 0.50 -0.6
449,714 - RR42_RS22805 0.50 -1.0
449,714 - RR42_RS22805 0.50 -0.2
449,715 + RR42_RS22805 0.50 +0.3
449,715 + RR42_RS22805 0.50 -0.3

Or see this region's nucleotide sequence