Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21850

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21845 and RR42_RS21850 are separated by 7 nucleotidesRR42_RS21850 and RR42_RS21855 are separated by 30 nucleotidesRR42_RS21855 and RR42_RS21860 are separated by 184 nucleotides RR42_RS21845: RR42_RS21845 - LacI family transcriptional regulator, at 228,543 to 229,529 _RS21845 RR42_RS21850: RR42_RS21850 - 3-oxoadipate enol-lactonase, at 229,537 to 230,325 _RS21850 RR42_RS21855: RR42_RS21855 - hypothetical protein, at 230,356 to 230,667 _RS21855 RR42_RS21860: RR42_RS21860 - hypothetical protein, at 230,852 to 231,661 _RS21860 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2 3at 228.554 kb on - strandat 228.633 kb on + strandat 228.633 kb on + strandat 228.634 kb on - strandat 228.880 kb on - strand, within RR42_RS21845at 228.930 kb on - strand, within RR42_RS21845at 229.014 kb on + strand, within RR42_RS21845at 229.014 kb on + strand, within RR42_RS21845at 229.014 kb on + strand, within RR42_RS21845at 229.014 kb on + strand, within RR42_RS21845at 229.015 kb on - strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.108 kb on - strand, within RR42_RS21845at 229.158 kb on + strand, within RR42_RS21845at 229.158 kb on + strand, within RR42_RS21845at 229.158 kb on + strand, within RR42_RS21845at 229.159 kb on - strand, within RR42_RS21845at 229.159 kb on - strand, within RR42_RS21845at 229.159 kb on - strand, within RR42_RS21845at 229.159 kb on - strand, within RR42_RS21845at 229.160 kb on + strand, within RR42_RS21845at 229.160 kb on + strand, within RR42_RS21845at 229.160 kb on + strand, within RR42_RS21845at 229.160 kb on + strand, within RR42_RS21845at 229.161 kb on - strand, within RR42_RS21845at 229.161 kb on - strand, within RR42_RS21845at 229.161 kb on - strand, within RR42_RS21845at 229.161 kb on - strand, within RR42_RS21845at 229.293 kb on + strand, within RR42_RS21845at 229.293 kb on + strand, within RR42_RS21845at 229.293 kb on + strand, within RR42_RS21845at 229.484 kb on + strandat 229.485 kb on - strandat 229.573 kb on + strandat 229.573 kb on + strandat 229.574 kb on - strandat 229.574 kb on - strandat 229.574 kb on - strandat 229.694 kb on - strand, within RR42_RS21850at 230.239 kb on + strand, within RR42_RS21850at 230.385 kb on + strandat 230.386 kb on - strandat 230.386 kb on - strandat 230.400 kb on + strand, within RR42_RS21855at 230.401 kb on - strand, within RR42_RS21855at 230.410 kb on - strand, within RR42_RS21855at 230.410 kb on - strand, within RR42_RS21855at 230.430 kb on + strand, within RR42_RS21855at 230.430 kb on + strand, within RR42_RS21855at 230.430 kb on + strand, within RR42_RS21855at 230.431 kb on - strand, within RR42_RS21855at 230.431 kb on - strand, within RR42_RS21855at 230.484 kb on - strand, within RR42_RS21855at 230.484 kb on - strand, within RR42_RS21855at 230.484 kb on - strand, within RR42_RS21855at 230.670 kb on + strandat 230.670 kb on - strandat 230.790 kb on + strandat 230.873 kb on + strandat 230.873 kb on + strandat 230.873 kb on + strandat 230.874 kb on - strandat 230.874 kb on - strandat 230.874 kb on - strandat 230.874 kb on - strandat 230.874 kb on - strandat 230.875 kb on + strandat 231.114 kb on + strand, within RR42_RS21860at 231.114 kb on + strand, within RR42_RS21860at 231.114 kb on + strand, within RR42_RS21860at 231.114 kb on + strand, within RR42_RS21860at 231.114 kb on + strand, within RR42_RS21860at 231.115 kb on - strand, within RR42_RS21860at 231.115 kb on - strand, within RR42_RS21860at 231.115 kb on - strand, within RR42_RS21860at 231.129 kb on + strand, within RR42_RS21860at 231.130 kb on - strand, within RR42_RS21860at 231.191 kb on + strand, within RR42_RS21860at 231.191 kb on + strand, within RR42_RS21860at 231.203 kb on - strand, within RR42_RS21860

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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228,554 - +0.1
228,633 + +2.0
228,633 + +0.3
228,634 - +0.6
228,880 - RR42_RS21845 0.34 +0.5
228,930 - RR42_RS21845 0.39 -0.4
229,014 + RR42_RS21845 0.48 +1.8
229,014 + RR42_RS21845 0.48 -1.1
229,014 + RR42_RS21845 0.48 -0.2
229,014 + RR42_RS21845 0.48 +0.2
229,015 - RR42_RS21845 0.48 -0.6
229,020 + RR42_RS21845 0.48 -1.2
229,020 + RR42_RS21845 0.48 -0.1
229,020 + RR42_RS21845 0.48 -0.0
229,020 + RR42_RS21845 0.48 +0.6
229,020 + RR42_RS21845 0.48 -0.1
229,020 + RR42_RS21845 0.48 +1.1
229,021 - RR42_RS21845 0.48 +0.5
229,021 - RR42_RS21845 0.48 +3.7
229,021 - RR42_RS21845 0.48 +0.4
229,021 - RR42_RS21845 0.48 +0.2
229,021 - RR42_RS21845 0.48 +0.4
229,021 - RR42_RS21845 0.48 -0.4
229,108 - RR42_RS21845 0.57 -0.6
229,158 + RR42_RS21845 0.62 +0.2
229,158 + RR42_RS21845 0.62 +0.9
229,158 + RR42_RS21845 0.62 -2.1
229,159 - RR42_RS21845 0.62 -1.4
229,159 - RR42_RS21845 0.62 -0.5
229,159 - RR42_RS21845 0.62 +0.1
229,159 - RR42_RS21845 0.62 +0.5
229,160 + RR42_RS21845 0.63 -0.1
229,160 + RR42_RS21845 0.63 -0.8
229,160 + RR42_RS21845 0.63 -0.9
229,160 + RR42_RS21845 0.63 -0.9
229,161 - RR42_RS21845 0.63 -1.2
229,161 - RR42_RS21845 0.63 +0.4
229,161 - RR42_RS21845 0.63 -0.1
229,161 - RR42_RS21845 0.63 +0.2
229,293 + RR42_RS21845 0.76 -0.3
229,293 + RR42_RS21845 0.76 +0.3
229,293 + RR42_RS21845 0.76 -0.4
229,484 + -0.7
229,485 - -0.7
229,573 + +0.4
229,573 + +0.1
229,574 - +0.4
229,574 - -0.2
229,574 - -0.9
229,694 - RR42_RS21850 0.20 +1.1
230,239 + RR42_RS21850 0.89 +0.5
230,385 + -0.4
230,386 - +0.8
230,386 - -0.9
230,400 + RR42_RS21855 0.14 -0.9
230,401 - RR42_RS21855 0.14 -0.6
230,410 - RR42_RS21855 0.17 -1.7
230,410 - RR42_RS21855 0.17 +0.1
230,430 + RR42_RS21855 0.24 +1.0
230,430 + RR42_RS21855 0.24 -0.6
230,430 + RR42_RS21855 0.24 -0.3
230,431 - RR42_RS21855 0.24 -1.0
230,431 - RR42_RS21855 0.24 +1.5
230,484 - RR42_RS21855 0.41 -0.4
230,484 - RR42_RS21855 0.41 -0.6
230,484 - RR42_RS21855 0.41 +0.4
230,670 + -0.1
230,670 - -1.2
230,790 + +1.4
230,873 + -0.7
230,873 + +1.0
230,873 + -1.2
230,874 - +1.1
230,874 - -1.2
230,874 - -0.6
230,874 - +1.1
230,874 - +0.6
230,875 + -1.4
231,114 + RR42_RS21860 0.32 -0.2
231,114 + RR42_RS21860 0.32 +0.2
231,114 + RR42_RS21860 0.32 -0.0
231,114 + RR42_RS21860 0.32 -0.0
231,114 + RR42_RS21860 0.32 +0.2
231,115 - RR42_RS21860 0.32 +1.4
231,115 - RR42_RS21860 0.32 -0.1
231,115 - RR42_RS21860 0.32 +2.4
231,129 + RR42_RS21860 0.34 -0.1
231,130 - RR42_RS21860 0.34 +0.9
231,191 + RR42_RS21860 0.42 +0.6
231,191 + RR42_RS21860 0.42 +0.4
231,203 - RR42_RS21860 0.43 +0.8

Or see this region's nucleotide sequence