Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21505 and RR42_RS21510 are separated by 41 nucleotides RR42_RS21510 and RR42_RS21515 are separated by 123 nucleotides RR42_RS21515 and RR42_RS21520 are separated by 226 nucleotides RR42_RS21520 and RR42_RS21525 are separated by 23 nucleotides
RR42_RS21505: RR42_RS21505 - hypothetical protein, at 153,402 to 153,971
_RS21505
RR42_RS21510: RR42_RS21510 - lysine transporter LysE, at 154,013 to 154,651
_RS21510
RR42_RS21515: RR42_RS21515 - LysR family transcriptional regulator, at 154,775 to 155,713
_RS21515
RR42_RS21520: RR42_RS21520 - flagellar brake protein, at 155,940 to 156,689
_RS21520
RR42_RS21525: RR42_RS21525 - hypothetical protein, at 156,713 to 157,810
_RS21525
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 153.894 kb on + strand, within RR42_RS21505 at 153.931 kb on + strand at 153.931 kb on + strand at 153.931 kb on + strand at 153.931 kb on + strand at 153.932 kb on - strand at 153.945 kb on + strand at 154.059 kb on - strand at 154.231 kb on + strand, within RR42_RS21510 at 154.231 kb on + strand, within RR42_RS21510 at 154.232 kb on - strand, within RR42_RS21510 at 154.233 kb on + strand, within RR42_RS21510 at 154.234 kb on - strand, within RR42_RS21510 at 154.234 kb on - strand, within RR42_RS21510 at 154.500 kb on - strand, within RR42_RS21510 at 154.655 kb on + strand at 154.708 kb on + strand at 154.708 kb on + strand at 154.708 kb on + strand at 154.709 kb on - strand at 154.709 kb on - strand at 154.709 kb on - strand at 154.730 kb on - strand at 154.731 kb on + strand at 154.964 kb on - strand, within RR42_RS21515 at 154.964 kb on - strand, within RR42_RS21515 at 155.110 kb on + strand, within RR42_RS21515 at 155.110 kb on + strand, within RR42_RS21515 at 155.110 kb on + strand, within RR42_RS21515 at 155.393 kb on + strand, within RR42_RS21515 at 155.531 kb on + strand, within RR42_RS21515 at 155.531 kb on + strand, within RR42_RS21515 at 155.531 kb on + strand, within RR42_RS21515 at 155.819 kb on + strand at 155.819 kb on + strand at 155.820 kb on - strand at 155.820 kb on - strand at 155.820 kb on - strand at 155.820 kb on - strand at 156.270 kb on + strand, within RR42_RS21520 at 156.270 kb on + strand, within RR42_RS21520 at 156.271 kb on - strand, within RR42_RS21520 at 156.369 kb on + strand, within RR42_RS21520 at 156.369 kb on + strand, within RR42_RS21520 at 156.369 kb on + strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.416 kb on + strand, within RR42_RS21520 at 156.416 kb on + strand, within RR42_RS21520
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 153,894 + RR42_RS21505 0.86 -0.2 153,931 + -0.1 153,931 + +0.5 153,931 + +4.9 153,931 + -0.7 153,932 - +0.1 153,945 + +0.5 154,059 - +0.4 154,231 + RR42_RS21510 0.34 -0.8 154,231 + RR42_RS21510 0.34 -0.8 154,232 - RR42_RS21510 0.34 -0.7 154,233 + RR42_RS21510 0.34 -0.4 154,234 - RR42_RS21510 0.35 +0.7 154,234 - RR42_RS21510 0.35 +0.8 154,500 - RR42_RS21510 0.76 +0.0 154,655 + +1.1 154,708 + +0.2 154,708 + -2.3 154,708 + -0.6 154,709 - -0.4 154,709 - +0.1 154,709 - -0.9 154,730 - +0.6 154,731 + -1.1 154,964 - RR42_RS21515 0.20 +1.8 154,964 - RR42_RS21515 0.20 -0.3 155,110 + RR42_RS21515 0.36 -1.1 155,110 + RR42_RS21515 0.36 -1.0 155,110 + RR42_RS21515 0.36 +0.8 155,393 + RR42_RS21515 0.66 +0.1 155,531 + RR42_RS21515 0.81 -0.1 155,531 + RR42_RS21515 0.81 -1.6 155,531 + RR42_RS21515 0.81 -0.2 155,819 + +1.0 155,819 + -1.2 155,820 - +0.1 155,820 - -0.6 155,820 - -1.2 155,820 - -0.2 156,270 + RR42_RS21520 0.44 +2.8 156,270 + RR42_RS21520 0.44 +1.4 156,271 - RR42_RS21520 0.44 -0.3 156,369 + RR42_RS21520 0.57 +0.2 156,369 + RR42_RS21520 0.57 +0.4 156,369 + RR42_RS21520 0.57 -1.5 156,370 - RR42_RS21520 0.57 +0.2 156,370 - RR42_RS21520 0.57 +1.1 156,370 - RR42_RS21520 0.57 +0.4 156,370 - RR42_RS21520 0.57 +0.7 156,370 - RR42_RS21520 0.57 +0.1 156,370 - RR42_RS21520 0.57 -0.1 156,416 + RR42_RS21520 0.63 -1.1 156,416 + RR42_RS21520 0.63 +0.0
Or see this region's nucleotide sequence