Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21390

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21385 and RR42_RS21390 are separated by 55 nucleotidesRR42_RS21390 and RR42_RS21395 are separated by 291 nucleotides RR42_RS21385: RR42_RS21385 - acetylpolyamine aminohydrolase, at 127,160 to 128,233 _RS21385 RR42_RS21390: RR42_RS21390 - allantoate amidohydrolase, at 128,289 to 129,542 _RS21390 RR42_RS21395: RR42_RS21395 - MFS transporter, at 129,834 to 130,835 _RS21395 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1 2at 127.451 kb on + strand, within RR42_RS21385at 127.454 kb on + strand, within RR42_RS21385at 127.454 kb on + strand, within RR42_RS21385at 127.455 kb on - strand, within RR42_RS21385at 127.455 kb on - strand, within RR42_RS21385at 127.455 kb on - strand, within RR42_RS21385at 127.526 kb on + strand, within RR42_RS21385at 127.527 kb on - strand, within RR42_RS21385at 127.527 kb on - strand, within RR42_RS21385at 127.650 kb on - strand, within RR42_RS21385at 127.880 kb on + strand, within RR42_RS21385at 127.880 kb on + strand, within RR42_RS21385at 127.881 kb on - strand, within RR42_RS21385at 127.881 kb on - strand, within RR42_RS21385at 127.926 kb on - strand, within RR42_RS21385at 127.926 kb on - strand, within RR42_RS21385at 127.926 kb on - strand, within RR42_RS21385at 128.012 kb on + strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385at 128.478 kb on - strand, within RR42_RS21390at 128.538 kb on - strand, within RR42_RS21390at 128.859 kb on - strand, within RR42_RS21390at 128.859 kb on - strand, within RR42_RS21390at 129.007 kb on - strand, within RR42_RS21390at 129.035 kb on - strand, within RR42_RS21390at 129.270 kb on + strand, within RR42_RS21390at 129.270 kb on + strand, within RR42_RS21390at 129.384 kb on + strand, within RR42_RS21390at 129.384 kb on + strand, within RR42_RS21390at 129.385 kb on - strand, within RR42_RS21390at 129.385 kb on - strand, within RR42_RS21390at 130.177 kb on - strand, within RR42_RS21395at 130.192 kb on - strand, within RR42_RS21395at 130.297 kb on - strand, within RR42_RS21395at 130.326 kb on + strand, within RR42_RS21395at 130.326 kb on + strand, within RR42_RS21395at 130.327 kb on - strand, within RR42_RS21395at 130.414 kb on - strand, within RR42_RS21395at 130.468 kb on - strand, within RR42_RS21395at 130.468 kb on - strand, within RR42_RS21395at 130.498 kb on - strand, within RR42_RS21395at 130.532 kb on - strand, within RR42_RS21395

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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127,451 + RR42_RS21385 0.27 +0.6
127,454 + RR42_RS21385 0.27 +0.9
127,454 + RR42_RS21385 0.27 +0.1
127,455 - RR42_RS21385 0.27 -0.4
127,455 - RR42_RS21385 0.27 +1.7
127,455 - RR42_RS21385 0.27 -1.4
127,526 + RR42_RS21385 0.34 +2.2
127,527 - RR42_RS21385 0.34 -0.1
127,527 - RR42_RS21385 0.34 +0.9
127,650 - RR42_RS21385 0.46 +1.2
127,880 + RR42_RS21385 0.67 -0.1
127,880 + RR42_RS21385 0.67 +1.6
127,881 - RR42_RS21385 0.67 +0.1
127,881 - RR42_RS21385 0.67 +1.0
127,926 - RR42_RS21385 0.71 +1.8
127,926 - RR42_RS21385 0.71 +1.0
127,926 - RR42_RS21385 0.71 -0.1
128,012 + RR42_RS21385 0.79 -0.9
128,055 - RR42_RS21385 0.83 +0.8
128,055 - RR42_RS21385 0.83 -1.1
128,055 - RR42_RS21385 0.83 -0.3
128,055 - RR42_RS21385 0.83 -0.6
128,055 - RR42_RS21385 0.83 -0.5
128,478 - RR42_RS21390 0.15 +0.4
128,538 - RR42_RS21390 0.20 -1.3
128,859 - RR42_RS21390 0.45 -0.9
128,859 - RR42_RS21390 0.45 -0.2
129,007 - RR42_RS21390 0.57 -0.6
129,035 - RR42_RS21390 0.59 -0.1
129,270 + RR42_RS21390 0.78 +0.1
129,270 + RR42_RS21390 0.78 +0.8
129,384 + RR42_RS21390 0.87 -0.6
129,384 + RR42_RS21390 0.87 +0.6
129,385 - RR42_RS21390 0.87 -0.9
129,385 - RR42_RS21390 0.87 -2.3
130,177 - RR42_RS21395 0.34 +0.3
130,192 - RR42_RS21395 0.36 +0.2
130,297 - RR42_RS21395 0.46 -0.7
130,326 + RR42_RS21395 0.49 -0.8
130,326 + RR42_RS21395 0.49 -0.7
130,327 - RR42_RS21395 0.49 -0.4
130,414 - RR42_RS21395 0.58 -0.6
130,468 - RR42_RS21395 0.63 +0.4
130,468 - RR42_RS21395 0.63 +2.1
130,498 - RR42_RS21395 0.66 +0.3
130,532 - RR42_RS21395 0.70 -0.4

Or see this region's nucleotide sequence