Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03930 and RR42_RS03935 are separated by 141 nucleotides RR42_RS03935 and RR42_RS03940 are separated by 66 nucleotides
RR42_RS03930: RR42_RS03930 - (2Fe-2S)-binding protein, at 866,349 to 867,365
_RS03930
RR42_RS03935: RR42_RS03935 - purine permease, at 867,507 to 868,805
_RS03935
RR42_RS03940: RR42_RS03940 - membrane protein, at 868,872 to 870,041
_RS03940
Position (kb) 867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 866.539 kb on - strand, within RR42_RS03930 at 866.587 kb on - strand, within RR42_RS03930 at 866.778 kb on + strand, within RR42_RS03930 at 866.778 kb on + strand, within RR42_RS03930 at 867.237 kb on + strand, within RR42_RS03930 at 867.363 kb on + strand at 867.363 kb on + strand at 867.364 kb on - strand at 867.590 kb on - strand at 867.590 kb on - strand at 867.590 kb on - strand at 867.594 kb on + strand at 867.594 kb on + strand at 867.594 kb on + strand at 867.594 kb on + strand at 867.594 kb on + strand at 867.595 kb on - strand at 867.595 kb on - strand at 868.203 kb on + strand, within RR42_RS03935 at 868.203 kb on + strand, within RR42_RS03935 at 868.405 kb on - strand, within RR42_RS03935 at 868.405 kb on - strand, within RR42_RS03935 at 868.413 kb on + strand, within RR42_RS03935 at 868.647 kb on + strand, within RR42_RS03935 at 868.647 kb on + strand, within RR42_RS03935 at 868.648 kb on - strand, within RR42_RS03935 at 868.648 kb on - strand, within RR42_RS03935 at 868.650 kb on - strand, within RR42_RS03935 at 868.777 kb on + strand at 868.899 kb on + strand at 868.900 kb on - strand at 869.314 kb on + strand, within RR42_RS03940 at 869.315 kb on - strand, within RR42_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 866,539 - RR42_RS03930 0.19 -0.7 866,587 - RR42_RS03930 0.23 +0.6 866,778 + RR42_RS03930 0.42 -0.8 866,778 + RR42_RS03930 0.42 -1.1 867,237 + RR42_RS03930 0.87 +0.0 867,363 + +1.2 867,363 + -0.8 867,364 - -0.1 867,590 - -0.1 867,590 - +2.7 867,590 - -0.5 867,594 + -0.3 867,594 + -0.3 867,594 + +0.0 867,594 + +0.3 867,594 + -0.5 867,595 - -0.2 867,595 - -0.9 868,203 + RR42_RS03935 0.54 +2.2 868,203 + RR42_RS03935 0.54 +0.4 868,405 - RR42_RS03935 0.69 -2.0 868,405 - RR42_RS03935 0.69 +0.1 868,413 + RR42_RS03935 0.70 -2.9 868,647 + RR42_RS03935 0.88 +0.2 868,647 + RR42_RS03935 0.88 +1.8 868,648 - RR42_RS03935 0.88 -0.1 868,648 - RR42_RS03935 0.88 +0.3 868,650 - RR42_RS03935 0.88 +0.6 868,777 + -0.1 868,899 + +0.1 868,900 - +0.2 869,314 + RR42_RS03940 0.38 +0.2 869,315 - RR42_RS03940 0.38 +1.4
Or see this region's nucleotide sequence