Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03800 and RR42_RS03805 are separated by 73 nucleotides RR42_RS03805 and RR42_RS03810 are separated by 283 nucleotides
RR42_RS03800: RR42_RS03800 - acetate kinase, at 838,359 to 839,585
_RS03800
RR42_RS03805: RR42_RS03805 - phosphate acetyltransferase, at 839,659 to 840,600
_RS03805
RR42_RS03810: RR42_RS03810 - 3-hydroxyalkanoate synthetase, at 840,884 to 843,061
_RS03810
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2 at 838.753 kb on + strand, within RR42_RS03800 at 838.754 kb on - strand, within RR42_RS03800 at 838.754 kb on - strand, within RR42_RS03800 at 838.996 kb on + strand, within RR42_RS03800 at 838.996 kb on + strand, within RR42_RS03800 at 838.997 kb on - strand, within RR42_RS03800 at 838.997 kb on - strand, within RR42_RS03800 at 838.997 kb on - strand, within RR42_RS03800 at 839.003 kb on - strand, within RR42_RS03800 at 839.047 kb on + strand, within RR42_RS03800 at 839.055 kb on - strand, within RR42_RS03800 at 839.221 kb on - strand, within RR42_RS03800 at 839.274 kb on + strand, within RR42_RS03800 at 839.275 kb on - strand, within RR42_RS03800 at 839.519 kb on - strand at 840.157 kb on - strand, within RR42_RS03805 at 840.578 kb on + strand at 840.579 kb on - strand at 840.579 kb on - strand at 840.673 kb on + strand at 840.673 kb on + strand at 840.674 kb on - strand at 840.676 kb on - strand at 840.676 kb on - strand at 840.862 kb on - strand at 840.962 kb on + strand at 840.963 kb on - strand at 841.121 kb on + strand, within RR42_RS03810 at 841.121 kb on + strand, within RR42_RS03810 at 841.137 kb on + strand, within RR42_RS03810 at 841.137 kb on + strand, within RR42_RS03810 at 841.138 kb on - strand, within RR42_RS03810 at 841.503 kb on - strand, within RR42_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 838,753 + RR42_RS03800 0.32 +1.4 838,754 - RR42_RS03800 0.32 +0.6 838,754 - RR42_RS03800 0.32 -0.2 838,996 + RR42_RS03800 0.52 +0.4 838,996 + RR42_RS03800 0.52 +1.1 838,997 - RR42_RS03800 0.52 +1.7 838,997 - RR42_RS03800 0.52 +1.9 838,997 - RR42_RS03800 0.52 +1.0 839,003 - RR42_RS03800 0.52 +0.5 839,047 + RR42_RS03800 0.56 -0.4 839,055 - RR42_RS03800 0.57 -2.2 839,221 - RR42_RS03800 0.70 +1.2 839,274 + RR42_RS03800 0.75 -0.4 839,275 - RR42_RS03800 0.75 -1.3 839,519 - +2.2 840,157 - RR42_RS03805 0.53 -1.4 840,578 + -0.3 840,579 - +0.7 840,579 - -1.0 840,673 + +0.1 840,673 + -1.8 840,674 - -0.6 840,676 - +0.8 840,676 - -0.3 840,862 - +1.2 840,962 + -0.7 840,963 - +1.2 841,121 + RR42_RS03810 0.11 -0.3 841,121 + RR42_RS03810 0.11 +1.2 841,137 + RR42_RS03810 0.12 -0.5 841,137 + RR42_RS03810 0.12 +0.9 841,138 - RR42_RS03810 0.12 +0.9 841,503 - RR42_RS03810 0.28 +1.0
Or see this region's nucleotide sequence