Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03095 and RR42_RS03100 are separated by 81 nucleotides RR42_RS03100 and RR42_RS03105 are separated by 306 nucleotides
RR42_RS03095: RR42_RS03095 - succinyl-CoA synthetase subunit beta, at 684,174 to 685,340
_RS03095
RR42_RS03100: RR42_RS03100 - succinate--CoA ligase, at 685,422 to 686,303
_RS03100
RR42_RS03105: RR42_RS03105 - integral membrane protein, at 686,610 to 687,305
_RS03105
Position (kb) 685
686
687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 684.498 kb on + strand, within RR42_RS03095 at 684.726 kb on + strand, within RR42_RS03095 at 684.727 kb on - strand, within RR42_RS03095 at 684.927 kb on + strand, within RR42_RS03095 at 685.338 kb on + strand at 685.338 kb on + strand at 685.338 kb on + strand at 685.417 kb on - strand at 685.439 kb on + strand at 685.512 kb on + strand, within RR42_RS03100 at 685.645 kb on - strand, within RR42_RS03100 at 686.301 kb on + strand at 686.301 kb on + strand at 686.302 kb on - strand at 686.305 kb on + strand at 686.306 kb on - strand at 686.435 kb on + strand at 686.436 kb on - strand at 686.440 kb on - strand at 686.440 kb on - strand at 686.440 kb on - strand at 686.440 kb on - strand at 686.444 kb on + strand at 686.445 kb on - strand at 686.494 kb on + strand at 686.495 kb on - strand at 686.500 kb on - strand at 686.500 kb on - strand at 686.583 kb on - strand at 686.588 kb on - strand at 686.606 kb on + strand at 686.606 kb on + strand at 686.606 kb on + strand at 686.677 kb on + strand at 686.826 kb on + strand, within RR42_RS03105 at 686.827 kb on - strand, within RR42_RS03105 at 686.859 kb on + strand, within RR42_RS03105 at 686.859 kb on + strand, within RR42_RS03105 at 686.860 kb on - strand, within RR42_RS03105 at 686.943 kb on - strand, within RR42_RS03105 at 686.943 kb on - strand, within RR42_RS03105 at 687.088 kb on + strand, within RR42_RS03105 at 687.088 kb on + strand, within RR42_RS03105 at 687.088 kb on + strand, within RR42_RS03105 at 687.089 kb on - strand, within RR42_RS03105 at 687.151 kb on - strand, within RR42_RS03105 at 687.151 kb on - strand, within RR42_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 684,498 + RR42_RS03095 0.28 +2.2 684,726 + RR42_RS03095 0.47 +1.2 684,727 - RR42_RS03095 0.47 -0.4 684,927 + RR42_RS03095 0.65 +2.2 685,338 + -0.2 685,338 + +0.0 685,338 + -0.1 685,417 - +0.2 685,439 + +2.2 685,512 + RR42_RS03100 0.10 +2.2 685,645 - RR42_RS03100 0.25 +2.2 686,301 + +0.1 686,301 + -0.4 686,302 - +0.2 686,305 + -0.2 686,306 - -1.0 686,435 + -1.9 686,436 - -0.4 686,440 - -0.1 686,440 - +2.0 686,440 - +2.6 686,440 - -2.0 686,444 + +0.2 686,445 - +1.2 686,494 + +0.6 686,495 - +0.0 686,500 - +0.6 686,500 - -1.0 686,583 - +0.3 686,588 - +0.3 686,606 + -0.4 686,606 + +0.5 686,606 + -0.1 686,677 + -0.4 686,826 + RR42_RS03105 0.31 +0.4 686,827 - RR42_RS03105 0.31 -0.7 686,859 + RR42_RS03105 0.36 -0.0 686,859 + RR42_RS03105 0.36 +0.4 686,860 - RR42_RS03105 0.36 +2.2 686,943 - RR42_RS03105 0.48 -0.6 686,943 - RR42_RS03105 0.48 +1.9 687,088 + RR42_RS03105 0.69 -0.8 687,088 + RR42_RS03105 0.69 -0.2 687,088 + RR42_RS03105 0.69 -0.1 687,089 - RR42_RS03105 0.69 +0.2 687,151 - RR42_RS03105 0.78 +0.0 687,151 - RR42_RS03105 0.78 +0.1
Or see this region's nucleotide sequence