Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02265

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02260 and RR42_RS02265 are separated by 343 nucleotidesRR42_RS02265 and RR42_RS02270 are separated by 297 nucleotidesRR42_RS02270 and RR42_RS02275 are separated by 119 nucleotides RR42_RS02260: RR42_RS02260 - cytochrome C peroxidase, at 500,877 to 502,229 _RS02260 RR42_RS02265: RR42_RS02265 - excinuclease ABC subunit A, at 502,573 to 508,392 _RS02265 RR42_RS02270: RR42_RS02270 - hypothetical protein, at 508,690 to 508,974 _RS02270 RR42_RS02275: RR42_RS02275 - aspartate aminotransferase, at 509,094 to 510,287 _RS02275 Position (kb) 502 503 504 505 506 507 508 509Strain fitness (log2 ratio) -2 -1 0 1 2 3at 501.615 kb on + strand, within RR42_RS02260at 501.622 kb on - strand, within RR42_RS02260at 501.634 kb on - strand, within RR42_RS02260at 501.900 kb on + strand, within RR42_RS02260at 501.901 kb on - strand, within RR42_RS02260at 502.107 kb on - strandat 502.107 kb on - strandat 502.270 kb on + strandat 502.271 kb on - strandat 502.426 kb on + strandat 502.445 kb on + strandat 502.547 kb on + strandat 502.547 kb on + strandat 502.548 kb on - strandat 502.558 kb on + strandat 502.559 kb on - strandat 502.984 kb on + strandat 502.985 kb on - strandat 503.105 kb on - strandat 503.266 kb on + strand, within RR42_RS02265at 503.266 kb on + strand, within RR42_RS02265at 503.354 kb on - strand, within RR42_RS02265at 503.655 kb on + strand, within RR42_RS02265at 503.656 kb on - strand, within RR42_RS02265at 503.656 kb on - strand, within RR42_RS02265at 503.656 kb on - strand, within RR42_RS02265at 503.666 kb on - strand, within RR42_RS02265at 503.690 kb on - strand, within RR42_RS02265at 503.690 kb on - strand, within RR42_RS02265at 503.708 kb on - strand, within RR42_RS02265at 503.708 kb on - strand, within RR42_RS02265at 503.719 kb on - strand, within RR42_RS02265at 503.740 kb on + strand, within RR42_RS02265at 503.749 kb on + strand, within RR42_RS02265at 503.750 kb on - strand, within RR42_RS02265at 503.750 kb on - strand, within RR42_RS02265at 503.750 kb on - strand, within RR42_RS02265at 503.750 kb on - strand, within RR42_RS02265at 503.972 kb on + strand, within RR42_RS02265at 504.255 kb on + strand, within RR42_RS02265at 504.751 kb on + strand, within RR42_RS02265at 504.752 kb on - strand, within RR42_RS02265at 504.752 kb on - strand, within RR42_RS02265at 504.817 kb on + strand, within RR42_RS02265at 504.818 kb on - strand, within RR42_RS02265at 504.819 kb on + strand, within RR42_RS02265at 504.919 kb on + strand, within RR42_RS02265at 505.127 kb on - strand, within RR42_RS02265at 505.127 kb on - strand, within RR42_RS02265at 505.195 kb on + strand, within RR42_RS02265at 505.224 kb on + strand, within RR42_RS02265at 505.517 kb on - strand, within RR42_RS02265at 505.948 kb on + strand, within RR42_RS02265at 505.949 kb on - strand, within RR42_RS02265at 505.949 kb on - strand, within RR42_RS02265at 505.949 kb on - strand, within RR42_RS02265at 505.949 kb on - strand, within RR42_RS02265at 506.041 kb on + strand, within RR42_RS02265at 506.041 kb on + strand, within RR42_RS02265at 506.041 kb on + strand, within RR42_RS02265at 506.098 kb on + strand, within RR42_RS02265at 506.428 kb on + strand, within RR42_RS02265at 506.429 kb on - strand, within RR42_RS02265at 506.458 kb on + strand, within RR42_RS02265at 506.840 kb on - strand, within RR42_RS02265at 506.939 kb on - strand, within RR42_RS02265at 507.283 kb on - strand, within RR42_RS02265at 507.649 kb on + strand, within RR42_RS02265at 507.649 kb on + strand, within RR42_RS02265at 507.649 kb on + strand, within RR42_RS02265at 507.649 kb on + strand, within RR42_RS02265at 507.650 kb on - strand, within RR42_RS02265at 507.650 kb on - strand, within RR42_RS02265at 507.650 kb on - strand, within RR42_RS02265at 507.651 kb on + strand, within RR42_RS02265at 507.652 kb on - strand, within RR42_RS02265at 507.955 kb on - strandat 507.997 kb on + strandat 508.126 kb on + strandat 508.126 kb on + strandat 508.127 kb on - strandat 508.127 kb on - strandat 508.871 kb on - strand, within RR42_RS02270at 509.033 kb on + strandat 509.075 kb on + strandat 509.076 kb on - strandat 509.305 kb on - strand, within RR42_RS02275at 509.305 kb on - strand, within RR42_RS02275

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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501,615 + RR42_RS02260 0.55 +1.2
501,622 - RR42_RS02260 0.55 -1.3
501,634 - RR42_RS02260 0.56 -0.4
501,900 + RR42_RS02260 0.76 -2.1
501,901 - RR42_RS02260 0.76 -0.1
502,107 - -0.6
502,107 - -1.8
502,270 + -0.7
502,271 - -1.5
502,426 + +0.7
502,445 + -0.5
502,547 + -0.7
502,547 + +0.0
502,548 - -0.6
502,558 + +0.5
502,559 - -0.8
502,984 + -1.8
502,985 - +0.7
503,105 - +0.5
503,266 + RR42_RS02265 0.12 -1.6
503,266 + RR42_RS02265 0.12 -0.3
503,354 - RR42_RS02265 0.13 +0.7
503,655 + RR42_RS02265 0.19 -0.0
503,656 - RR42_RS02265 0.19 -0.6
503,656 - RR42_RS02265 0.19 -0.8
503,656 - RR42_RS02265 0.19 +0.9
503,666 - RR42_RS02265 0.19 -1.5
503,690 - RR42_RS02265 0.19 +1.3
503,690 - RR42_RS02265 0.19 +0.0
503,708 - RR42_RS02265 0.20 +0.7
503,708 - RR42_RS02265 0.20 +0.1
503,719 - RR42_RS02265 0.20 -1.1
503,740 + RR42_RS02265 0.20 +1.1
503,749 + RR42_RS02265 0.20 -0.1
503,750 - RR42_RS02265 0.20 -0.3
503,750 - RR42_RS02265 0.20 -0.1
503,750 - RR42_RS02265 0.20 -0.7
503,750 - RR42_RS02265 0.20 -2.3
503,972 + RR42_RS02265 0.24 -0.8
504,255 + RR42_RS02265 0.29 -1.0
504,751 + RR42_RS02265 0.37 +1.6
504,752 - RR42_RS02265 0.37 -0.4
504,752 - RR42_RS02265 0.37 +0.7
504,817 + RR42_RS02265 0.39 +0.7
504,818 - RR42_RS02265 0.39 -0.3
504,819 + RR42_RS02265 0.39 -0.7
504,919 + RR42_RS02265 0.40 +0.4
505,127 - RR42_RS02265 0.44 -0.3
505,127 - RR42_RS02265 0.44 -0.8
505,195 + RR42_RS02265 0.45 -0.2
505,224 + RR42_RS02265 0.46 -0.8
505,517 - RR42_RS02265 0.51 -0.7
505,948 + RR42_RS02265 0.58 -1.2
505,949 - RR42_RS02265 0.58 -0.3
505,949 - RR42_RS02265 0.58 +0.0
505,949 - RR42_RS02265 0.58 -0.3
505,949 - RR42_RS02265 0.58 -0.2
506,041 + RR42_RS02265 0.60 +0.4
506,041 + RR42_RS02265 0.60 +0.7
506,041 + RR42_RS02265 0.60 +1.0
506,098 + RR42_RS02265 0.61 +0.7
506,428 + RR42_RS02265 0.66 +0.3
506,429 - RR42_RS02265 0.66 +0.3
506,458 + RR42_RS02265 0.67 -0.8
506,840 - RR42_RS02265 0.73 +1.2
506,939 - RR42_RS02265 0.75 -2.6
507,283 - RR42_RS02265 0.81 +0.2
507,649 + RR42_RS02265 0.87 +0.7
507,649 + RR42_RS02265 0.87 -0.4
507,649 + RR42_RS02265 0.87 +0.7
507,649 + RR42_RS02265 0.87 -1.2
507,650 - RR42_RS02265 0.87 -0.5
507,650 - RR42_RS02265 0.87 -0.8
507,650 - RR42_RS02265 0.87 -1.8
507,651 + RR42_RS02265 0.87 -0.5
507,652 - RR42_RS02265 0.87 +0.1
507,955 - -0.3
507,997 + +0.8
508,126 + +0.6
508,126 + -0.2
508,127 - -1.1
508,127 - +0.0
508,871 - RR42_RS02270 0.64 -1.3
509,033 + +0.9
509,075 + +3.1
509,076 - +0.0
509,305 - RR42_RS02275 0.18 -0.6
509,305 - RR42_RS02275 0.18 -0.9

Or see this region's nucleotide sequence