Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01310

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01300 and RR42_RS01305 are separated by 6 nucleotidesRR42_RS01305 and RR42_RS01310 overlap by 4 nucleotidesRR42_RS01310 and RR42_RS01315 are separated by 92 nucleotidesRR42_RS01315 and RR42_RS01320 are separated by 59 nucleotides RR42_RS01300: RR42_RS01300 - thiamine biosynthesis protein ThiS, at 297,091 to 297,288 _RS01300 RR42_RS01305: RR42_RS01305 - thiazole synthase, at 297,295 to 298,143 _RS01305 RR42_RS01310: RR42_RS01310 - thiamine-phosphate pyrophosphorylase, at 298,140 to 299,273 _RS01310 RR42_RS01315: RR42_RS01315 - GNAT family acetyltransferase, at 299,366 to 299,869 _RS01315 RR42_RS01320: RR42_RS01320 - ATPase AAA, at 299,929 to 300,705 _RS01320 Position (kb) 298 299 300Strain fitness (log2 ratio) -1 0 1 2 3at 299.401 kb on - strandat 299.401 kb on - strandat 299.439 kb on + strand, within RR42_RS01315at 299.440 kb on - strand, within RR42_RS01315at 299.440 kb on - strand, within RR42_RS01315at 300.037 kb on + strand, within RR42_RS01320at 300.124 kb on + strand, within RR42_RS01320at 300.124 kb on + strand, within RR42_RS01320at 300.125 kb on - strand, within RR42_RS01320at 300.193 kb on + strand, within RR42_RS01320at 300.193 kb on + strand, within RR42_RS01320

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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299,401 - +0.1
299,401 - +2.4
299,439 + RR42_RS01315 0.14 -0.5
299,440 - RR42_RS01315 0.15 -0.8
299,440 - RR42_RS01315 0.15 +0.4
300,037 + RR42_RS01320 0.14 +0.6
300,124 + RR42_RS01320 0.25 -0.4
300,124 + RR42_RS01320 0.25 -0.3
300,125 - RR42_RS01320 0.25 -0.6
300,193 + RR42_RS01320 0.34 +3.4
300,193 + RR42_RS01320 0.34 +0.9

Or see this region's nucleotide sequence