Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00745 and RR42_RS00750 are separated by 58 nucleotides RR42_RS00750 and RR42_RS00755 are separated by 123 nucleotides
RR42_RS00745: RR42_RS00745 - IclR family transcriptional regulator, at 187,547 to 188,383
_RS00745
RR42_RS00750: RR42_RS00750 - hypothetical protein, at 188,442 to 189,422
_RS00750
RR42_RS00755: RR42_RS00755 - 3-oxoadipate enol-lactonase, at 189,546 to 190,388
_RS00755
Position (kb) 188
189
190 Strain fitness (log2 ratio) -2
-1
0
1
2 at 187.444 kb on + strand at 187.445 kb on - strand at 187.445 kb on - strand at 187.446 kb on + strand at 187.450 kb on - strand at 187.450 kb on - strand at 187.498 kb on - strand at 187.498 kb on - strand at 187.507 kb on + strand at 187.507 kb on + strand at 187.508 kb on - strand at 187.508 kb on - strand at 187.706 kb on + strand, within RR42_RS00745 at 187.764 kb on - strand, within RR42_RS00745 at 188.015 kb on + strand, within RR42_RS00745 at 188.016 kb on - strand, within RR42_RS00745 at 188.016 kb on - strand, within RR42_RS00745 at 188.081 kb on - strand, within RR42_RS00745 at 188.081 kb on - strand, within RR42_RS00745 at 188.081 kb on - strand, within RR42_RS00745 at 188.081 kb on - strand, within RR42_RS00745 at 188.111 kb on + strand at 188.111 kb on + strand, within RR42_RS00745 at 188.112 kb on - strand, within RR42_RS00745 at 188.112 kb on - strand, within RR42_RS00745 at 188.259 kb on + strand, within RR42_RS00745 at 188.259 kb on + strand, within RR42_RS00745 at 188.260 kb on - strand, within RR42_RS00745 at 188.336 kb on + strand at 188.336 kb on + strand at 188.468 kb on + strand at 188.468 kb on + strand at 188.469 kb on - strand at 188.469 kb on - strand at 188.883 kb on + strand, within RR42_RS00750 at 189.145 kb on - strand, within RR42_RS00750 at 189.145 kb on - strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.217 kb on - strand, within RR42_RS00750 at 189.217 kb on - strand, within RR42_RS00750 at 189.217 kb on - strand, within RR42_RS00750 at 189.239 kb on + strand, within RR42_RS00750 at 189.450 kb on - strand at 189.727 kb on - strand, within RR42_RS00755 at 189.772 kb on - strand, within RR42_RS00755 at 189.772 kb on - strand, within RR42_RS00755 at 190.184 kb on + strand, within RR42_RS00755 at 190.184 kb on + strand, within RR42_RS00755 at 190.305 kb on - strand at 190.381 kb on + strand at 190.381 kb on + strand at 190.381 kb on + strand at 190.381 kb on + strand at 190.382 kb on - strand at 190.382 kb on - strand at 190.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 187,444 + -0.0 187,445 - -1.2 187,445 - +0.8 187,446 + +0.4 187,450 - -1.4 187,450 - +1.4 187,498 - -0.2 187,498 - -0.7 187,507 + -0.0 187,507 + -1.2 187,508 - -0.3 187,508 - +0.8 187,706 + RR42_RS00745 0.19 -1.5 187,764 - RR42_RS00745 0.26 -1.6 188,015 + RR42_RS00745 0.56 +0.7 188,016 - RR42_RS00745 0.56 +0.6 188,016 - RR42_RS00745 0.56 -0.6 188,081 - RR42_RS00745 0.64 +0.1 188,081 - RR42_RS00745 0.64 -0.6 188,081 - RR42_RS00745 0.64 -1.1 188,081 - RR42_RS00745 0.64 -1.1 188,111 + +0.4 188,111 + RR42_RS00745 0.67 +0.6 188,112 - RR42_RS00745 0.68 -0.2 188,112 - RR42_RS00745 0.68 +0.6 188,259 + RR42_RS00745 0.85 -2.7 188,259 + RR42_RS00745 0.85 -0.7 188,260 - RR42_RS00745 0.85 +1.8 188,336 + -0.7 188,336 + -1.6 188,468 + +0.5 188,468 + -0.3 188,469 - -1.6 188,469 - -1.1 188,883 + RR42_RS00750 0.45 -0.3 189,145 - RR42_RS00750 0.72 -1.0 189,145 - RR42_RS00750 0.72 -0.4 189,216 + RR42_RS00750 0.79 -0.8 189,216 + RR42_RS00750 0.79 -0.2 189,216 + RR42_RS00750 0.79 -1.3 189,216 + RR42_RS00750 0.79 +2.4 189,216 + RR42_RS00750 0.79 +1.0 189,216 + RR42_RS00750 0.79 -0.4 189,216 + RR42_RS00750 0.79 -1.0 189,216 + RR42_RS00750 0.79 +1.6 189,216 + RR42_RS00750 0.79 -1.0 189,217 - RR42_RS00750 0.79 -0.6 189,217 - RR42_RS00750 0.79 -0.5 189,217 - RR42_RS00750 0.79 -2.2 189,239 + RR42_RS00750 0.81 +0.8 189,450 - +0.3 189,727 - RR42_RS00755 0.21 +1.1 189,772 - RR42_RS00755 0.27 -1.5 189,772 - RR42_RS00755 0.27 -0.5 190,184 + RR42_RS00755 0.76 -1.1 190,184 + RR42_RS00755 0.76 +1.8 190,305 - +0.4 190,381 + +1.8 190,381 + +1.6 190,381 + -0.6 190,381 + +1.3 190,382 - -0.7 190,382 - +1.4 190,382 - -0.8
Or see this region's nucleotide sequence