Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00215 and RR42_RS00220 are separated by 40 nucleotides RR42_RS00220 and RR42_RS00225 are separated by 86 nucleotides RR42_RS00225 and RR42_RS00230 are separated by 197 nucleotides
RR42_RS00215: RR42_RS00215 - branched-chain amino acid ABC transporter ATP-binding protein, at 67,946 to 69,235
_RS00215
RR42_RS00220: RR42_RS00220 - peptidase M20, at 69,276 to 70,568
_RS00220
RR42_RS00225: RR42_RS00225 - XRE family transcriptional regulator, at 70,655 to 71,239
_RS00225
RR42_RS00230: RR42_RS00230 - ADP-ribosylglycohydrolase, at 71,437 to 72,531
_RS00230
Position (kb) 69
70
71 Strain fitness (log2 ratio) -2
-1
0
1
2 at 68.835 kb on - strand, within RR42_RS00215 at 69.445 kb on - strand, within RR42_RS00220 at 69.601 kb on - strand, within RR42_RS00220 at 69.765 kb on + strand, within RR42_RS00220 at 70.069 kb on - strand, within RR42_RS00220 at 70.074 kb on + strand, within RR42_RS00220 at 70.165 kb on + strand, within RR42_RS00220 at 70.165 kb on + strand, within RR42_RS00220 at 70.177 kb on + strand, within RR42_RS00220 at 70.177 kb on + strand, within RR42_RS00220 at 70.177 kb on + strand, within RR42_RS00220 at 70.275 kb on + strand, within RR42_RS00220 at 70.420 kb on - strand, within RR42_RS00220 at 70.420 kb on - strand, within RR42_RS00220 at 70.513 kb on + strand at 70.539 kb on + strand at 70.540 kb on - strand at 70.566 kb on + strand at 70.916 kb on - strand, within RR42_RS00225 at 71.123 kb on + strand, within RR42_RS00225 at 71.123 kb on + strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.391 kb on + strand at 71.563 kb on + strand, within RR42_RS00230 at 71.563 kb on + strand, within RR42_RS00230 at 71.563 kb on + strand, within RR42_RS00230 at 71.564 kb on - strand, within RR42_RS00230 at 71.564 kb on - strand, within RR42_RS00230 at 71.564 kb on - strand, within RR42_RS00230
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 68,835 - RR42_RS00215 0.69 -0.3 69,445 - RR42_RS00220 0.13 -0.8 69,601 - RR42_RS00220 0.25 -0.3 69,765 + RR42_RS00220 0.38 +0.4 70,069 - RR42_RS00220 0.61 +0.4 70,074 + RR42_RS00220 0.62 +0.3 70,165 + RR42_RS00220 0.69 -0.9 70,165 + RR42_RS00220 0.69 +0.1 70,177 + RR42_RS00220 0.70 -0.0 70,177 + RR42_RS00220 0.70 +0.7 70,177 + RR42_RS00220 0.70 -0.7 70,275 + RR42_RS00220 0.77 +0.0 70,420 - RR42_RS00220 0.88 +0.5 70,420 - RR42_RS00220 0.88 +1.8 70,513 + -0.7 70,539 + -0.4 70,540 - -0.0 70,566 + +0.2 70,916 - RR42_RS00225 0.45 +1.5 71,123 + RR42_RS00225 0.80 +0.4 71,123 + RR42_RS00225 0.80 +1.2 71,124 - RR42_RS00225 0.80 -0.6 71,124 - RR42_RS00225 0.80 +0.4 71,124 - RR42_RS00225 0.80 +0.2 71,124 - RR42_RS00225 0.80 +0.1 71,391 + -2.4 71,563 + RR42_RS00230 0.12 -0.2 71,563 + RR42_RS00230 0.12 +0.4 71,563 + RR42_RS00230 0.12 +0.8 71,564 - RR42_RS00230 0.12 +0.3 71,564 - RR42_RS00230 0.12 +2.3 71,564 - RR42_RS00230 0.12 -1.1
Or see this region's nucleotide sequence