Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00175 and RR42_RS00180 are separated by 216 nucleotides RR42_RS00180 and RR42_RS00185 are separated by 43 nucleotides
RR42_RS00175: RR42_RS00175 - hypothetical protein, at 59,836 to 60,633
_RS00175
RR42_RS00180: RR42_RS00180 - hypothetical protein, at 60,850 to 61,080
_RS00180
RR42_RS00185: RR42_RS00185 - hypothetical protein, at 61,124 to 61,363
_RS00185
Position (kb) 61
62 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 60.318 kb on + strand, within RR42_RS00175 at 60.358 kb on - strand, within RR42_RS00175 at 60.358 kb on - strand, within RR42_RS00175 at 60.358 kb on - strand, within RR42_RS00175 at 60.453 kb on + strand, within RR42_RS00175 at 60.454 kb on - strand, within RR42_RS00175 at 60.454 kb on - strand, within RR42_RS00175 at 60.454 kb on - strand, within RR42_RS00175 at 60.454 kb on - strand, within RR42_RS00175 at 60.483 kb on + strand, within RR42_RS00175 at 60.514 kb on - strand, within RR42_RS00175 at 60.577 kb on + strand at 60.596 kb on - strand at 60.694 kb on + strand at 60.861 kb on + strand at 60.861 kb on + strand at 60.862 kb on - strand at 60.940 kb on - strand, within RR42_RS00180 at 60.958 kb on + strand, within RR42_RS00180 at 60.995 kb on + strand, within RR42_RS00180 at 60.995 kb on + strand, within RR42_RS00180 at 60.995 kb on + strand, within RR42_RS00180 at 60.996 kb on - strand, within RR42_RS00180 at 61.025 kb on + strand, within RR42_RS00180 at 61.025 kb on + strand, within RR42_RS00180 at 61.136 kb on + strand at 61.136 kb on + strand at 61.137 kb on - strand at 61.137 kb on - strand at 61.152 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.305 kb on - strand, within RR42_RS00185 at 61.305 kb on - strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.563 kb on + strand at 61.571 kb on + strand at 61.571 kb on + strand at 61.572 kb on - strand at 61.572 kb on - strand at 61.654 kb on + strand at 61.655 kb on - strand at 61.725 kb on - strand at 61.782 kb on + strand at 61.782 kb on + strand at 61.826 kb on + strand at 61.826 kb on + strand at 61.827 kb on - strand at 61.827 kb on - strand at 61.827 kb on - strand at 61.888 kb on + strand at 61.889 kb on - strand at 61.889 kb on - strand at 61.928 kb on - strand at 61.930 kb on + strand at 61.930 kb on + strand at 61.931 kb on - strand at 61.931 kb on - strand at 62.033 kb on + strand at 62.033 kb on + strand at 62.033 kb on + strand at 62.038 kb on - strand at 62.038 kb on - strand at 62.130 kb on + strand at 62.188 kb on - strand at 62.261 kb on + strand at 62.268 kb on - strand at 62.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 60,318 + RR42_RS00175 0.60 +1.1 60,358 - RR42_RS00175 0.65 -1.0 60,358 - RR42_RS00175 0.65 +1.6 60,358 - RR42_RS00175 0.65 +0.4 60,453 + RR42_RS00175 0.77 +1.2 60,454 - RR42_RS00175 0.77 +1.2 60,454 - RR42_RS00175 0.77 -1.3 60,454 - RR42_RS00175 0.77 -0.6 60,454 - RR42_RS00175 0.77 +0.9 60,483 + RR42_RS00175 0.81 -2.2 60,514 - RR42_RS00175 0.85 +0.1 60,577 + +1.1 60,596 - -1.2 60,694 + -1.1 60,861 + +1.2 60,861 + -1.8 60,862 - +1.1 60,940 - RR42_RS00180 0.39 +1.1 60,958 + RR42_RS00180 0.47 +0.8 60,995 + RR42_RS00180 0.63 +1.1 60,995 + RR42_RS00180 0.63 -0.0 60,995 + RR42_RS00180 0.63 -0.0 60,996 - RR42_RS00180 0.63 -0.2 61,025 + RR42_RS00180 0.76 +0.7 61,025 + RR42_RS00180 0.76 -0.9 61,136 + +1.4 61,136 + -0.4 61,137 - -0.1 61,137 - +0.0 61,152 + RR42_RS00185 0.12 -1.7 61,304 + RR42_RS00185 0.75 +1.1 61,304 + RR42_RS00185 0.75 +0.4 61,304 + RR42_RS00185 0.75 -1.2 61,304 + RR42_RS00185 0.75 -0.8 61,304 + RR42_RS00185 0.75 +1.2 61,304 + RR42_RS00185 0.75 -0.7 61,305 - RR42_RS00185 0.75 +1.8 61,305 - RR42_RS00185 0.75 +0.8 61,333 + RR42_RS00185 0.87 -0.5 61,333 + RR42_RS00185 0.87 -1.2 61,333 + RR42_RS00185 0.87 -1.2 61,333 + RR42_RS00185 0.87 +3.4 61,333 + RR42_RS00185 0.87 +0.9 61,563 + +2.2 61,571 + +1.2 61,571 + -0.6 61,572 - -0.2 61,572 - -0.9 61,654 + -1.5 61,655 - -0.6 61,725 - +0.3 61,782 + +2.4 61,782 + -0.8 61,826 + +0.4 61,826 + +1.4 61,827 - +0.6 61,827 - +0.3 61,827 - +0.6 61,888 + -1.3 61,889 - -1.6 61,889 - +0.2 61,928 - +0.6 61,930 + -0.2 61,930 + -0.4 61,931 - +2.4 61,931 - +0.4 62,033 + -1.7 62,033 + -0.2 62,033 + -0.3 62,038 - +1.8 62,038 - -0.4 62,130 + +0.2 62,188 - +0.4 62,261 + +0.5 62,268 - -0.1 62,268 - +1.1
Or see this region's nucleotide sequence